Factsheet for Bra034616.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57737	Canola	cytosol	28.45	100.0
Bra034615.1-P	Field mustard	cytosol	28.45	100.0
CDX76268	Canola	plastid	99.5	99.67
CDY57736	Canola	plastid	60.57	95.54
Bra017637.1-P	Field mustard	plastid	93.68	94.15
Bra011506.1-P	Field mustard	plastid	94.34	91.3
HORVU2Hr1G113180.3	Barley	cytosol	62.73	83.22
PGSC0003DMT400059818	Potato	plastid	80.87	81.68
Solyc10g049890.1.1	Tomato	plastid	80.7	81.51
KRH35731	Soybean	nucleus	80.2	81.14
KRG91030	Soybean	endoplasmic reticulum	79.87	80.67
Bra001747.1-P	Field mustard	plastid	74.88	76.66
Os04t0650800-01	Rice	plastid	77.04	75.53
GSMUA_Achr4P11440_001	Banana	plastid	70.88	74.87
EES12983	Sorghum	plastid	76.87	74.52
Zm00001d026472_P001	Maize	plastid	75.87	74.51
VIT_03s0180g00130.t01	Wine grape	cytosol	80.53	74.12
TraesCS2A01G508900.1	Wheat	plastid	75.87	74.03
GSMUA_Achr4P04100_001	Banana	plastid	70.55	73.1
Zm00001d002051_P001	Maize	plastid	75.87	72.84
Bra016589.1-P	Field mustard	plastid	71.38	69.08
Bra035498.1-P	Field mustard	cytosol	4.33	26.53
Bra035206.1-P	Field mustard	cytosol	13.31	25.81
Bra004275.1-P	Field mustard	cytosol	16.14	25.13
Bra004055.1-P	Field mustard	cytosol	16.14	25.13
Bra003888.1-P	Field mustard	mitochondrion	15.31	24.73
Bra023487.1-P	Field mustard	mitochondrion	15.47	24.22
Bra003537.1-P	Field mustard	cytosol	12.48	23.96
Bra019774.1-P	Field mustard	cytosol	13.48	23.48
Bra008737.1-P	Field mustard	mitochondrion	14.97	23.44
Bra026966.1-P	Field mustard	cytosol	8.99	22.59
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	12.15	18.39

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:Bra034616	EnsemblPlants:Bra034616.1
EnsemblPlants:Bra034616.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	UniProt:M4F0M1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI0002546579	SEG:seg

Description

AT4G34200 (E=8e-297) EDA9 | EDA9 (embryo sac development arrest 9); ATP binding

Coordinates

chrA08:+:12514429..12516481

Molecular Weight (calculated)

63148.4 Da

IEP (calculated)

6.220

GRAVY (calculated)

0.138

Length

601 amino acids

Sequence
(BLAST)

001: MSAAAASSAI SVAATNPLKT FSLSSRSPLP SAISLPSRSL NTPRRRLVLV SCTAGDGSKP TILVAEKLGE AGVKLLEGFA NVDCSYNMTP EELNTKISLC
101: DALIVRSGTK VGREVFESSR GRLKVVGRAG VGIDNVDLSA ATEFGCLVVN APTANTIAAA EHGIALLASM ARNVAQSDAS VKAGEWKRNK YVGVSLVGKT
201: LAVMGFGKVG TEVARRAKGL GMRVIAHDPY APADRAHAIG VELVSFDEAL ATADFISLHM PLTPATNKIL NDETFAKMKK GVRIVNVARG GVIDEDALVR
301: ALDAGIVSQA ALDVFTTEPP AKDSPLVQHE NVTVTPHLGA STMEAQEGVA IEIAEAVVGA LNGELAATAV NAPMVSAEVL TELKPYVILA EKLGRLAVQL
401: VAGGSGVKNV KVSYTSARAT DDLDTRLLRA MITKGIIEPI SDVYVNLVNA DFTAKQRGLR LSEERVLLDG SPENPLETIT VQLGNVESKF ASSLSESGEV
501: KVEGRVKDGI PHLTKVGSFE VDVTLEGSII LCRQVDQPGM IGTVGSILGE SNVNVNFMSV GRIAPRKQAI MAIGVDDQPS KETLKKIGEI PAIEEFVFLK
601: L

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.