Factsheet for Os04t0650800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 18260611
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12983	Sorghum	plastid	93.31	92.26
Zm00001d026472_P001	Maize	plastid	91.03	91.18
HORVU2Hr1G113180.3	Barley	cytosol	67.21	90.95
Zm00001d002051_P001	Maize	plastid	92.33	90.42
TraesCS2A01G508900.1	Wheat	plastid	84.83	84.42
GSMUA_Achr4P11440_001	Banana	plastid	74.55	80.32
KRG91030	Soybean	endoplasmic reticulum	77.49	79.83
PGSC0003DMT400059818	Potato	plastid	76.67	78.99
CDY57737	Canola	cytosol	22.02	78.95
KRH35731	Soybean	nucleus	76.35	78.79
Solyc10g049890.1.1	Tomato	plastid	76.35	78.66
PGSC0003DMT400046698	Potato	plastid	76.18	77.83
Solyc03g112070.2.1	Tomato	plastid	76.18	77.83
GSMUA_Achr4P04100_001	Banana	plastid	73.25	77.41
CDY22972	Canola	plastid	74.06	77.34
CDX76268	Canola	plastid	75.69	77.33
VIT_18s0001g09890.t01	Wine grape	plastid	76.18	77.19
CDX82295	Canola	plastid	73.9	77.17
AT3G19480.1	Thale cress	plastid	73.9	77.04
Bra034616.1-P	Field mustard	plastid	75.53	77.04
CDX75409	Canola	plastid	74.71	76.85
Bra001747.1-P	Field mustard	plastid	73.57	76.83
CDY49286	Canola	plastid	74.71	76.59
CDX72462	Canola	plastid	74.71	76.59
Bra017637.1-P	Field mustard	plastid	74.71	76.59
AT4G34200.1	Thale cress	plastid	74.71	75.95
CDY57736	Canola	plastid	46.82	75.33
VIT_03s0180g00130.t01	Wine grape	cytosol	79.45	74.58
Bra011506.1-P	Field mustard	plastid	74.39	73.43
CDX69034	Canola	plastid	75.04	72.78
Os08t0447000-01	Rice	plastid	70.8	69.89
Os06t0655100-00	Rice	plastid	70.8	68.56
Os01t0228600-01	Rice	extracellular	14.68	28.48
Os04t0107200-01	Rice	mitochondrion	14.68	27.36
Os04t0107500-01	Rice	plasma membrane	14.03	27.22
Os07t0263400-00	Rice	cytosol	12.56	27.11
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	14.36	26.75
Os02t0101500-02	Rice	extracellular, mitochondrion	16.8	26.68
Os07t0264100-01	Rice	mitochondrion	16.15	26.47
Os04t0107300-01	Rice	mitochondrion, plasma membrane	14.03	26.38
Os06t0486900-01	Rice	mitochondrion	14.52	23.55
Os06t0486800-01	Rice	mitochondrion	14.36	23.4
Os11t0229100-01	Rice	extracellular	5.06	22.3

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	EntrezGene:4337230	InterPro:ACT_dom	EMBL:AK120939	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
ProteinID:BAF16008.1	ProteinID:BAS91364.1	ProteinID:CAE04505.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR006311
InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os04g0650800	EnsemblPlants:Os04t0650800-01	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51318
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	UniProt:Q7XMP6	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	InterPro:TAT_signal	TIGRFAMs:TIGR01327	UniParc:UPI00001B17E9
RefSeq:XP_015635449.1	SEG:seg	:	:	:	:

Description

Similar to Phosphoglycerate dehydrogenase. (Os04t0650800-01);Similar to H0212B02.14 protein. (Os04t0650800-02)

Coordinates

chr4:+:33167054..33169881

Molecular Weight (calculated)

63968.7 Da

IEP (calculated)

7.335

GRAVY (calculated)

0.183

Length

613 amino acids

Sequence
(BLAST)

001: MAAPSQTTAT TTHHRVLLPS HHHHRAVPPS LLRLPLRAAR RGRLSAAAAA AAPAASTAAP SEPAAGAVPG KPTVLVAEKL GAAGLELLRG FANVDCSYGL
101: SPEELRAKIP LCDALIVRSG TKVGRDVFEA SGGRLRVVGR AGVGIDNVDL AAATEHGCLV VNAPTANTVA AAEHGIALLT AMSRNIAQAD ASLKAGKWQR
201: NKYVGVSLVG KTIAILGFGK VGSEVARRAK GLGMHVIAHD PYASADRAHA IGVELVSMED ALTTADFISL HMPLTPATNK MLNDETFAKM KKGVRIINVA
301: RGGVIDEDAL VRALDSGIVA QAALDVFTKE PPAPDSKLVL HENVTVTPHL GASTVEAQEG VAIEIAEAVI GALKGELAAS AVNAPMVPAE VLSELAPYVV
401: LAEKLGRLAV QLVAGGGGIK SVKVTYASAR APDDLDTRLL RAMITKGLIE PISSVFVNLV NADFTAKQRG VRITEERILL DGSPETPIDY IQVHIAHVES
501: KFPSAISESG EITVEGKVKD GIPHLTKVGS FQVDVSLEGS LILCRQVDQP GMIGAVGSVL GEENVNVSFM SVGRIAPRKH AVMAIGVDEE PKKSTLTKIG
601: EIPAIEEFVF LKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.