Factsheet for Os08t0447000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15079	Sorghum	plastid	88.41	88.69
HORVU1Hr1G056180.2	Barley	plastid	86.47	87.18
TraesCS1D01G222600.2	Wheat	plastid	86.47	86.75
TraesCS1B01G234300.2	Wheat	plastid	86.31	86.59
TraesCS3A01G146800.1	Wheat	plastid	86.15	86.29
TraesCS1A01G221000.1	Wheat	plastid	79.55	84.73
Zm00001d032114_P001	Maize	plastid	87.28	82.25
Os04t0650800-01	Rice	plastid	69.89	70.8
Os06t0655100-00	Rice	plastid	68.44	67.14
KRH23702	Soybean	extracellular	61.03	64.68
Os01t0228600-01	Rice	extracellular	14.49	28.48
Os04t0107200-01	Rice	mitochondrion	14.01	26.44
Os04t0107300-01	Rice	mitochondrion, plasma membrane	13.85	26.38
Os04t0106400-01	Rice	cytosol, mitochondrion, plastid	13.85	26.14
Os07t0263400-00	Rice	cytosol	11.43	25.0
Os04t0107500-01	Rice	plasma membrane	12.56	24.68
Os11t0229100-01	Rice	extracellular	5.48	24.46
Os02t0101500-02	Rice	extracellular, mitochondrion	14.98	24.09
Os07t0264100-01	Rice	mitochondrion	14.01	23.26
Os06t0486800-01	Rice	mitochondrion	13.85	22.87
Os06t0486900-01	Rice	mitochondrion	13.53	22.22

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	EntrezGene:4345710	InterPro:ACT_dom	EMBL:AK243399	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
ProteinID:BAD09434.1	ProteinID:BAD09817.1	ProteinID:BAT05676.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os08g0447000	EnsemblPlants:Os08t0447000-01	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	UniProt:Q6ZAA5	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000023AE09	RefSeq:XP_015650533.1	SEG:seg	:

Description

Similar to D-3-phosphoglycerate dehydrogenase. (Os08t0447000-01)

Coordinates

chr8:-:21818095..21823157

Molecular Weight (calculated)

64562.9 Da

IEP (calculated)

6.970

GRAVY (calculated)

0.166

Length

621 amino acids

Sequence
(BLAST)

001: MATAAAASRA ALSRPHAAAA AARASPAAGA RVTLPRRRSV RSAVISSSAS AAAVAASEPA AGRVTLGAGT DGALWPKPAV LVAEKLSEAG LAVLRGFADV
101: ECAYGMSPAE LLAKVAQFDA LIVRSGTKVT REVLEAGRGR LRVVGRAGVG IDNVDLQAAT EAGCLVVNAP TANTVAAAEH GIALLASMAR NVSQADAALK
201: AGKWQRTKYV GVSLVGKTLA VMGFGKVGSE VARRAKGLGM HVIAHDPYAP ADRARAIGAE LVSFDEAIGR ADFISLHMPL TPATSKVFND ESFSRMKNGV
301: RIINVARGGV IDEDALVRAL DSGKVAQAAL DVFTEEPPAK DSKLVLHENV TVTPHLGAST VEAQEGVAIE IAEAVVGALR GELAATAVNA PMVPAEVMSE
401: LAPYVSLAEK LGKLAVQLVA GESGGIKGVK VVYTTARGPD DLDTRLLRAM VTKGIVEPVS STFVNLVNAD YTAKQRGLRI TEERVSHESP AAEAPLESIQ
501: VRLSHVQSKF AGAISDGGDI VLEGRVKYGV PHLTVVGPYE VDVSLEGNLI LCRQIDQPGM IGKVGNILGQ TNVNISFMSV GRTFRGKQAI MAIGVDEEPD
601: KETLEHIGHI PAIEEFVFLE L

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.