Factsheet for TraesCS1A01G221000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G146800.1	Wheat	plastid	97.77	91.94
TraesCS1D01G222600.2	Wheat	plastid	96.74	91.11
TraesCS1B01G234300.2	Wheat	plastid	96.57	90.95
HORVU1Hr1G056180.2	Barley	plastid	94.34	89.29
Os08t0447000-01	Rice	plastid	84.73	79.55
EES15079	Sorghum	plastid	84.39	79.48
Zm00001d032114_P001	Maize	plastid	85.25	75.42
TraesCS2A01G508900.1	Wheat	plastid	68.95	65.26
TraesCS7A01G496500.1	Wheat	plastid	67.75	64.54
KRH23702	Soybean	extracellular	59.86	59.56
TraesCS2A01G034900.1	Wheat	mitochondrion	14.24	25.62
TraesCS2A01G034800.1	Wheat	cytosol, plasma membrane, plastid	13.38	24.68
TraesCS3A01G153500.1	Wheat	peroxisome	13.04	23.9
TraesCS2A01G028600.1	Wheat	extracellular, plasma membrane	13.21	22.99
TraesCS2A01G035500.1	Wheat	extracellular, mitochondrion	13.04	22.75
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	12.18	22.47
TraesCS6A01G000400.1	Wheat	peroxisome	14.58	22.02
TraesCS7A01G538500.1	Wheat	cytosol	12.86	21.8
TraesCS2A01G035400.1	Wheat	mitochondrion	12.18	21.52
TraesCS2A01G035000.2	Wheat	mitochondrion, plastid	13.21	21.27
TraesCS7A01G232200.1	Wheat	golgi	12.69	19.63
TraesCS5A01G161300.1	Wheat	plastid	12.52	19.31
TraesCS6A01G274900.1	Wheat	mitochondrion	9.95	15.38

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom
InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735
SUPFAM:SSF52283	SUPFAM:SSF55021	EnsemblPlantsGene:TraesCS1A01G221000	EnsemblPlants:TraesCS1A01G221000.1	TIGR:cd04902	TIGR:cd12173
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:389869228..389874932

Molecular Weight (calculated)

61051.0 Da

IEP (calculated)

9.048

GRAVY (calculated)

0.146

Length

583 amino acids

Sequence
(BLAST)

001: MSSSRVLLSS PHGVASRTFT RAAPAHLAAP SIPFARSGTL RARTAILSSP AATVPVTSTE PKRRISRSVS DSAPRAKPAV LVAEKLGEAG LDVLRQFADV
101: ECAYGMSPAE LLAKVAQFDA LIVRSGTKVT REVLEAGRGR LRVVGRAGVG IDNVDLQAAT EAGCLVVNAP TANTVAAAEH GIALLACMAR NVSQADAALK
201: AGKWQRAKYV GVSLVGKTLA IMGFGKVGSE VARRAKGLGM HVIAHDPYAP ADKARAIGAE LVSFEEAIAK ADFISLHMPL TPATSKVFND ESFGKMKTGV
301: RIVNVARGGV IDEDALVRAL DSGKVAQEGV AIEIAEAVGG ALRGELAATA VNAPMVPAEV MSELAPYVSL AEKLGRLAVQ LVAGESGIKG VKVVYTSARD
401: PDDLDTRLLR AMITKGIVEP VSSTFVNLVN ADYTAKQRGL RIAEERVSHD NAAAEAPLES IQVRLSHVQS RFAGAISDGG DIVVVGRVKY GVPHLTVVGA
501: YEVDVSLEGN LILCRQVDQP GMIGKVGNIL GEKNVNVSFM SVGRTSRGKQ AIMAIGVDEE PDKKTLEKIG AIPAVEEFVF LEL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.