Factsheet for TraesCS1D01G222600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G234300.2	Wheat	plastid	98.71	98.71
TraesCS3A01G146800.1	Wheat	plastid	97.74	97.58
HORVU1Hr1G056180.2	Barley	plastid	96.45	96.92
TraesCS1A01G221000.1	Wheat	plastid	91.11	96.74
Os08t0447000-01	Rice	plastid	86.75	86.47
EES15079	Sorghum	plastid	86.43	86.43
Zm00001d032114_P001	Maize	plastid	87.56	82.25
TraesCS7D01G483800.1	Wheat	plastid	69.63	70.66
KRH23702	Soybean	extracellular	61.55	65.02
TraesCS2D01G034100.1	Wheat	mitochondrion	15.99	30.56
TraesCS3D01G160800.1	Wheat	cytosol	14.54	28.3
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	14.54	28.21
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	15.19	28.14
TraesCS2D01G030900.1	Wheat	cytosol	14.22	27.85
TraesCS2D01G034600.1	Wheat	mitochondrion	14.22	26.67
TraesCS2D01G034300.1	Wheat	plastid	14.86	25.41
TraesCS6D01G001700.1	Wheat	golgi, plastid	15.35	24.61
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	13.89	22.75
TraesCS6D01G255200.2	Wheat	mitochondrion	13.57	22.28
TraesCS7D01G232300.1	Wheat	mitochondrion	13.25	21.75
TraesCS4D01G007200.1	Wheat	golgi	12.76	21.07
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	12.28	20.71
TraesCS3D01G160900.1	Wheat	cytosol	1.13	3.76

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	EnsemblPlantsGene:TraesCS1D01G222600	EnsemblPlants:TraesCS1D01G222600.2
TIGR:cd04902	TIGR:cd12173	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:310140599..310144761

Molecular Weight (calculated)

64734.4 Da

IEP (calculated)

8.456

GRAVY (calculated)

0.154

Length

619 amino acids

Sequence
(BLAST)

001: MSASRALLSS PHGGASRTFT RAPTRLAAAS IPFARCGALR ARTAILSSPA ATVPVTSSEP KRRISRSVSD SAPLAKPAVL VAEKLGEAGL DVLRQFADVE
101: CAYGMSPAEL LAKVAQFDAL IVRSGTKVTR EVLEAGRGRL RVVGRAGVGI DNVDLQAATE AGCLVVNAPT ANTVAAAEHG IALLACMARN VSQADAALKA
201: GKWQRAKYVG VSLVGKTLAI MGFGKVGSEV ARRAKGLGMH VIAHDPYAPA DKARAIGAEL VSFEEAIAKA DFISLHMPLT PATSKVFNDE SFGKMKTGVR
301: IINVARGGVI DEDALVRALD SGKVAQAALD VFTVEPPAKD SKLVLHENVT VTPHLGASTV EAQEGVAIEI AEAVGGALRG ELAATAVNAP MVPAEVLSEL
401: APYVSLAEKL GRLAVQLVAG ESGIKGVKVV YTSARDPDDL DTRLLRAMVT KGIVEPVSST FVNLVNADYT AKQRGLRIAE ERVSHDNAAA EAPLESIQVR
501: LSHVQSKFAG AISDGGDIVV VGRVKYGVPH LTVVGPYEVD VSLEGNLILC RQIDQPGMIG KVGNILGQRN VNVSFMSVGR TSRGKQAIMA IGVDEEPDKK
601: TLEKIGAIPA VEEFVFLEL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.