Factsheet for Zm00001d032114_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15079	Sorghum	plastid	87.56	93.21
HORVU1Hr1G056180.2	Barley	plastid	82.55	88.31
TraesCS1B01G234300.2	Wheat	plastid	82.25	87.56
TraesCS1D01G222600.2	Wheat	plastid	82.25	87.56
Os08t0447000-01	Rice	plastid	82.25	87.28
TraesCS3A01G146800.1	Wheat	plastid	81.34	86.45
TraesCS1A01G221000.1	Wheat	plastid	75.42	85.25
Zm00001d026472_P001	Maize	plastid	67.07	72.22
Zm00001d002051_P001	Maize	plastid	67.53	71.09
Zm00001d046923_P001	Maize	plastid	63.28	70.8
KRH23702	Soybean	extracellular	57.97	65.19
Zm00001d008883_P001	Maize	mitochondrion	15.78	31.52
Zm00001d018790_P001	Maize	extracellular, plasma membrane	13.81	29.07
Zm00001d024906_P001	Maize	cytosol	13.96	27.96
Zm00001d004451_P001	Maize	cytosol	13.96	27.3
Zm00001d030544_P001	Maize	cytosol, extracellular	12.75	26.25
Zm00001d024907_P001	Maize	mitochondrion	13.35	26.11
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	10.93	25.53
Zm00001d053924_P001	Maize	cytosol	9.1	25.42
Zm00001d011368_P001	Maize	cytosol	11.08	25.26
Zm00001d011367_P001	Maize	cytosol	11.08	25.26
Zm00001d014163_P001	Maize	mitochondrion	9.26	25.21
Zm00001d005489_P006	Maize	mitochondrion	14.11	23.79
Zm00001d045965_P001	Maize	mitochondrion	13.05	22.87
Zm00001d004323_P001	Maize	mitochondrion	4.86	22.07
Zm00001d014919_P002	Maize	mitochondrion	14.42	21.99
Zm00001d019818_P001	Maize	mitochondrion	4.55	20.69
Zm00001d033618_P001	Maize	cytosol	10.77	18.44
Zm00001d017801_P001	Maize	mitochondrion	4.1	15.7

Protein Annotations

KEGG:00270+3.3.1.1	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1	UniProt:A0A1D6KNM8
InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM04418.1	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997
SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	UniParc:UPI00084426EA	EnsemblPlantsGene:Zm00001d032114
EnsemblPlants:Zm00001d032114_P001	EnsemblPlants:Zm00001d032114_T001	SEG:seg	:	:	:

Description

D-3-phosphoglycerate dehydrogenase 2 chloroplastic

Coordinates

chr1:+:213508794..213513171

Molecular Weight (calculated)

69429.1 Da

IEP (calculated)

6.688

GRAVY (calculated)

0.172

Length

659 amino acids

Sequence
(BLAST)

001: MAASRALLPS PQVSPASARV RLAAAVPSSL TLAARGGAGA GARLRVRCAI LSSPAPVAPT ESRPVRRISP SAPDGALRPK PAVLVAEKLS EAGLAVLRQF
101: ADVECAYGMS PAELLAKAAQ FDALIVRSGT KVTREVLEAG QGRLRVVGRA GVGIDNVDLQ AATEVGCLVV NAPTANTIAA AEHGIALLAS MARNVSQADA
201: ALKAGKWQRN KYVGVSLVGK TLAVMGFGKV GSEVARRAKG LGMHVIAHDP YAPADRARAL GVELVSFDEA IARADFISLH MPLIPTTSKI FNDESFAKMK
301: TGVRIINVAR GGVIDEDALV RALDSGKVAQ VGDHNFVRFF NVSTYMDVSL KAEFFFYACM TNVEQAALDV FTVEPPPKDS KLVLHENVTV TPHLGASTVE
401: AQEGVAIEIA EAVVGALRGE LAATAVNAPM VPAEILSELA PYVSLAEKLG RLAVQLVAGE SGIKGVKVVY TTARGPDDLD TRLLRAMVTK GLVEPVSSTF
501: VNLVNADYTA KQRGLRLTEE RVAHDSPAAE APLESVQVRL SHVQSKFAGA ISDGGDDIVL EGRVKYGVPH LTLVGPYEVD VSLEGNLILC RQIDQPGMIG
601: KVGNILGDTN VNINFMSVGR TFRGKQAIMA IGVDEEPDKD TLEKIGAIPA IEEFVFLEL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.