CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0447000-01	Rice	plastid	88.69	88.41
Zm00001d032114_P001	Maize	plastid	93.21	87.56
HORVU1Hr1G056180.2	Barley	plastid	86.59	87.01
TraesCS1D01G222600.2	Wheat	plastid	86.43	86.43
TraesCS1B01G234300.2	Wheat	plastid	86.43	86.43
TraesCS3A01G146800.1	Wheat	plastid	85.62	85.48
TraesCS1A01G221000.1	Wheat	plastid	79.48	84.39
EES12983	Sorghum	plastid	71.24	71.13
EER90146	Sorghum	mitochondrion, plastid	68.66	69.33
KRH23702	Soybean	extracellular	62.84	66.38
KXG31500	Sorghum	cytosol	14.7	28.89
OQU81061	Sorghum	plastid	14.38	27.9
EES11740	Sorghum	mitochondrion	14.7	27.58
OQU88433	Sorghum	cytosol	13.89	26.79
EES11738	Sorghum	cytosol	14.54	26.63
EES10400	Sorghum	cytosol	14.22	26.04
OQU81058	Sorghum	cytosol	14.05	25.97
EES10352	Sorghum	cytosol, mitochondrion	13.89	25.44
KXG29243	Sorghum	cytosol	15.51	25.2
EER96197	Sorghum	mitochondrion	14.38	23.12
KXG34859	Sorghum	mitochondrion, plastid	14.22	22.92
EER89775	Sorghum	mitochondrion	13.89	22.87
EES07384	Sorghum	mitochondrion	13.25	21.35

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	EntrezGene:8077869	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	UniProt:C5YLQ3
ncoils:Coil	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_NAD-bd	EnsemblPlants:EES15079	ProteinID:EES15079
ProteinID:EES15079.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488
GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997
EnsemblPlantsGene:SORBI_3007G145000	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	unigene:Sbi.11065
TIGRFAMs:TIGR01327	UniParc:UPI0001A87BFF	RefSeq:XP_002445584.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:57500193..57506168

Molecular Weight (calculated)

64838.6 Da

IEP (calculated)

7.018

GRAVY (calculated)

0.178

Length

619 amino acids

Sequence
(BLAST)

001: MAASRALLPS PQASPAARVA VAPSSLTTLA ARTGAARLRV VRCAVLSSPA APVAESSKPP AHRISRSGSD GALRPKPAVL VAEKLSEAGL AVLREFADVE
101: CAYGMSPAEL LAKVSQFDAL IVRSGTKVTR EVLEAGRGRL RVVGRAGVGI DNVDLQAATE VGCLVVNAPT ANTVAAAEHG IALLASMARN VSQADAALKA
201: GKWQRNKYVG VSLVGKTLSI MGFGKVGSEV ARRAKGLGMH VIAHDPYAPA DRARALGVEL VSFDEAIGRA DFISLHMPLI PTTSKIFNDE SFAKMKTGVR
301: IINVARGGVI DEDALVRALD SGKVAQAALD VFTVEPPAKD SMLVLHENVT VTPHLGASTV EAQEGVAIEI AEAVVGALRG ELAATAVNAP MVPAEIMSEL
401: APYVSLAEKL GRLAVQLVAG ESGIKGVKVV YTTARGPDDL DTRLLRAMVT KGLVEPVSST FVNLVNADYA AKQRGLRITE ERVAHDSPAA EAPLESVQVR
501: LSNVQSKFAG AISDGGDIVL EGRVKYGVPH LTLVGPYEVD VSLEGNLILC RQIDQPGMIG KVGNILGQRN VNISFMSVGR TFRGKQAIMA IGVDEEPDKE
601: TLENIGAIPA IEEFVFLEL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.