Factsheet for Zm00001d026472_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002051_P001	Maize	plastid	95.1	92.97
HORVU2Hr1G113180.3	Barley	cytosol	67.81	91.61
Os04t0650800-01	Rice	plastid	91.18	91.03
TraesCS2A01G508900.1	Wheat	plastid	85.62	85.06
KRG91030	Soybean	endoplasmic reticulum	77.78	80.0
GSMUA_Achr4P11440_001	Banana	plastid	74.18	79.79
KRH35731	Soybean	nucleus	76.63	78.96
Solyc03g112070.2.1	Tomato	plastid	76.96	78.5
PGSC0003DMT400059818	Potato	plastid	76.14	78.32
PGSC0003DMT400046698	Potato	plastid	76.47	78.0
Solyc10g049890.1.1	Tomato	plastid	75.82	77.98
CDY22972	Canola	plastid	74.67	77.85
CDY57737	Canola	cytosol	21.73	77.78
CDX82295	Canola	plastid	74.51	77.68
Bra001747.1-P	Field mustard	plastid	74.18	77.34
AT3G19480.1	Thale cress	plastid	74.18	77.21
VIT_18s0001g09890.t01	Wine grape	plastid	76.31	77.19
GSMUA_Achr4P04100_001	Banana	plastid	72.88	76.9
CDX75409	Canola	plastid	74.51	76.51
CDX76268	Canola	plastid	74.67	76.17
CDY49286	Canola	plastid	74.18	75.92
CDX72462	Canola	plastid	74.18	75.92
Bra017637.1-P	Field mustard	plastid	74.18	75.92
Bra034616.1-P	Field mustard	plastid	74.51	75.87
AT4G34200.1	Thale cress	plastid	74.18	75.29
VIT_03s0180g00130.t01	Wine grape	cytosol	79.9	74.89
CDY57736	Canola	plastid	46.57	74.8
Bra011506.1-P	Field mustard	plastid	74.18	73.11
CDX69034	Canola	plastid	74.84	72.47
Zm00001d046923_P001	Maize	plastid	68.3	70.97
Zm00001d032114_P001	Maize	plastid	72.22	67.07
Zm00001d008883_P001	Maize	mitochondrion	17.32	32.12
Zm00001d018790_P001	Maize	extracellular, plasma membrane	15.52	30.35
Zm00001d024906_P001	Maize	cytosol	14.71	27.36
Zm00001d005489_P006	Maize	mitochondrion	16.83	26.34
Zm00001d053924_P001	Maize	cytosol	9.8	25.42
Zm00001d004451_P001	Maize	cytosol	13.89	25.22
Zm00001d030544_P001	Maize	cytosol, extracellular	13.07	25.0
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	11.44	24.82
Zm00001d014163_P001	Maize	mitochondrion	9.8	24.79
Zm00001d024907_P001	Maize	mitochondrion	13.56	24.63
Zm00001d011368_P001	Maize	cytosol	11.6	24.57
Zm00001d011367_P001	Maize	cytosol	11.6	24.57
Zm00001d014919_P002	Maize	mitochondrion	16.5	23.38
Zm00001d004323_P001	Maize	mitochondrion	5.39	22.76
Zm00001d045965_P001	Maize	mitochondrion	13.24	21.54
Zm00001d019818_P001	Maize	mitochondrion	5.07	21.38
Zm00001d033618_P001	Maize	cytosol	11.11	17.66
Zm00001d017801_P001	Maize	mitochondrion	3.76	13.37

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:100280735	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	ProteinID:AQK46705.1	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
EMBL:BT069208	UniProt:C0PLN9	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735
SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000195D3CE	EnsemblPlantsGene:Zm00001d026472	EnsemblPlants:Zm00001d026472_P001
EnsemblPlants:Zm00001d026472_T001	SEG:seg	:	:	:	:

Description

D-3-phosphoglycerate dehydrogenase 3 chloroplastic

Coordinates

chr10:+:146562821..146566812

Molecular Weight (calculated)

63927.6 Da

IEP (calculated)

7.311

GRAVY (calculated)

0.197

Length

612 amino acids

Sequence
(BLAST)

001: MAAPPATTAT THHRALLPPT RTHAAATHSA LRLPLRAHPH AHAQRARLTA AAAPAPAAST ASLESSAAGK PTVLVAEKLG AAGLALLREF ANVDCSYGLS
101: PEDLRAKISL CDALIVRSGT KVGRDVFEAS GGRLRVVGRA GVGIDNVDLA AATEHGCLVV NAPTANTVAA AEHGIALLTA MARNIAQADA SLKAGKWQRN
201: KYVGVSLVGK TLAILGFGKV GSEVARRAKG LGMHVIAHDP YASADRARAI GVELVSMEEA MTTADFISLH MPLTPATNKM LNDEAFAKMK YGVRIINVAR
301: GGVIDEDALV RALDSGIVAQ AALDVFTKEP PAPDNKLVLH ENVTVTPHLG ASTVEAQEGV AIEIAEAVIG ALKGELAASA VNAPMVPAEV LSELAPFVVL
401: AEKLGHLAVQ LVAGGGGIKS VKVTYASARA PDDLDTRLLR AMITKGLIEP ISSVFVNLVN ADFTAKQRGV RITEERIILD GSPETPIDYI QVQIANVKSK
501: FPSAISETGE ITVEGRVKDG VPHLTKVGAF QVDVSLEGSL ILCRQVDQPG MIGSVGSVLG EENINVSFMS VGRIAPRKHA VMAIGVDEEP SKVTLRKIGE
601: IPAIEEFVFL KL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.