Factsheet for Bra001747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82295	Canola	plastid	99.15	99.15
AT3G19480.1	Thale cress	plastid	93.02	92.86
HORVU2Hr1G113180.3	Barley	cytosol	62.01	80.35
KRH35731	Soybean	nucleus	80.75	79.8
KRG91030	Soybean	endoplasmic reticulum	80.41	79.33
Bra034615.1-P	Field mustard	cytosol	22.49	77.19
Bra017637.1-P	Field mustard	plastid	78.02	76.59
PGSC0003DMT400059818	Potato	plastid	77.34	76.3
Solyc10g049890.1.1	Tomato	plastid	77.17	76.13
Bra034616.1-P	Field mustard	plastid	76.66	74.88
Zm00001d026472_P001	Maize	plastid	77.34	74.18
Os04t0650800-01	Rice	plastid	76.83	73.57
EES12983	Sorghum	plastid	77.51	73.39
Bra011506.1-P	Field mustard	plastid	77.17	72.95
GSMUA_Achr4P11440_001	Banana	plastid	70.7	72.94
Zm00001d002051_P001	Maize	plastid	77.34	72.52
VIT_03s0180g00130.t01	Wine grape	cytosol	79.73	71.67
GSMUA_Achr4P04100_001	Banana	plastid	70.7	71.55
TraesCS2A01G508900.1	Wheat	plastid	74.96	71.43
Bra016589.1-P	Field mustard	plastid	70.36	66.51
Bra004275.1-P	Field mustard	cytosol	17.38	26.42
Bra004055.1-P	Field mustard	cytosol	17.38	26.42
Bra035206.1-P	Field mustard	cytosol	12.95	24.52
Bra035498.1-P	Field mustard	cytosol	4.09	24.49
Bra003537.1-P	Field mustard	cytosol	12.27	23.0
Bra003888.1-P	Field mustard	mitochondrion	14.48	22.85
Bra026966.1-P	Field mustard	cytosol	9.2	22.59
Bra019774.1-P	Field mustard	cytosol	13.12	22.32
Bra023487.1-P	Field mustard	mitochondrion	13.8	21.09
Bra008737.1-P	Field mustard	mitochondrion	13.29	20.31
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	11.41	16.88

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:Bra001747	EnsemblPlants:Bra001747.1
EnsemblPlants:Bra001747.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009
UniProt:M4CC17	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH
ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14
SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327
UniParc:UPI00025404F6	SEG:seg	:	:	:	:

Description

AT3G19480 (E=5e-283) | D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative

Coordinates

chrA03:-:18228054..18230367

Molecular Weight (calculated)

62221.8 Da

IEP (calculated)

7.989

GRAVY (calculated)

0.190

Length

587 amino acids

Sequence
(BLAST)

001: MSTPLGLSSL FSSRLYTTTP SAFPIHRKEF NRRRIILVTA GGGGKPTILV AEKLGQAGID LLKKHANVEC SYDLSVEELC TKISLWDALI VRSGTKVGRD
101: VFESSRGRLK VVGRAGVGID NVDLAAATEY GCLVVNAPTA NTVAAAEHGI ALLTAMARNV AQADASIKAG KWMRSKYVGV SLVGKTLAVL GFGKVGSEVA
201: RRARGLGMHV ITHDPYAPAD RARAIGVELV SFEVAISTAD FISLHLPLTA ATSKMLNDET FARMKRGVRI VNVARGGVID EDALLRALDS GIVAQAALDV
301: FTVEPPVKDN KLVLHESVTA TPHLGASTME AQEGVAVEIA EAVVGALRGE LAATAVNAPM VPPEVLRELK PYVVLAEKLG RLAVQLVTGG SGVDAVKVTY
401: ASSRSPDDLD TRLLRAMVIK GLIEPISSVF INLVNSDYVA KQRGVKISEE RMVLDGSPED PIEYITVRIA NVESRFASAL SESGEIKVEG RVKQGVPSLT
501: KVGLFGVDVS LEGSVILCRQ VDQPGMIGKV GSILGDENVN VSFMSVGRIA PGKQAVMAIG VDEQPSKETL KKIGDISAIE EFVFLKL

Best Arabidopsis Sequence Match ( AT3G19480.1 )
(BLAST)

001: MATSLNLSSI FSSSSRLVTT PSSVFPIRQR RRIILVTSSS SGGGGKPTIL VTEKLGQAGI DLLKKYANVD CSYDLSLEEL CTKISLCDAL IVRSGTKVGR
101: DVFESSRGRL KVVGRAGVGI DNVDLAAATE YGCLVVNAPT ANTVAAAEHG IALLTAMARN IAQADASIKA GKWTRNKYVG VSLVGKTLAV LGFGKVGSEV
201: ARRARGLGMH VITHDPYAPA DRARAIGVEL VSFEVAISTA DFISLHLPLT AATSKMMNDV TFAMMKKGVR IVNVARGGVI DEEALLRALD SGIVAQAALD
301: VFTVEPPVKD NKLVLHESVT ATPHLGASTM EAQEGVSIEV AEAVIGALRG ELAATAVNAP MVPLEVLREL KPYVVLAEKL GRLAVQLVTG GSGVNAVKVT
401: YASSRAPDDL DTRLLRAMVI KGIIEPISSV FINLVNSDYI AKQRGVKISE ERMVLDGSPE NPIEYITVRI ANVESRFASA LSESGEIKVE GRVKQGVPSL
501: TKVGLFGVDV SLEGSVILCR QVDQPGMIGK VASILGDENV NVSFMSVGRI APGKQAVMAI GVDEQPSKET LKKIGDIPAI EEFVFLKL

Arabidopsis Description

PGDH3D-3-phosphoglycerate dehydrogenase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LT69]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.