Factsheet for Bra011506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75409	Canola	plastid	95.49	99.5
Bra034615.1-P	Field mustard	cytosol	26.73	97.08
CDX69034	Canola	plastid	97.42	95.73
Bra017637.1-P	Field mustard	plastid	91.3	94.82
Bra034616.1-P	Field mustard	plastid	91.3	94.34
HORVU2Hr1G113180.3	Barley	cytosol	60.39	82.78
Solyc10g049890.1.1	Tomato	plastid	78.1	81.51
PGSC0003DMT400059818	Potato	plastid	78.1	81.51
KRH35731	Soybean	nucleus	77.78	81.31
KRG91030	Soybean	endoplasmic reticulum	77.29	80.67
Bra001747.1-P	Field mustard	plastid	72.95	77.17
GSMUA_Achr4P11440_001	Banana	plastid	68.28	74.52
Os04t0650800-01	Rice	plastid	73.43	74.39
EES12983	Sorghum	plastid	74.07	74.19
Zm00001d026472_P001	Maize	plastid	73.11	74.18
VIT_03s0180g00130.t01	Wine grape	cytosol	77.78	73.97
TraesCS2A01G508900.1	Wheat	plastid	72.95	73.54
GSMUA_Achr4P04100_001	Banana	plastid	68.12	72.93
Zm00001d002051_P001	Maize	plastid	73.43	72.84
Bra016589.1-P	Field mustard	plastid	68.76	68.76
Bra035498.1-P	Field mustard	cytosol	4.19	26.53
Bra035206.1-P	Field mustard	cytosol	12.88	25.81
Bra004275.1-P	Field mustard	cytosol	15.78	25.39
Bra004055.1-P	Field mustard	cytosol	15.78	25.39
Bra003888.1-P	Field mustard	mitochondrion	14.81	24.73
Bra003537.1-P	Field mustard	cytosol	12.08	23.96
Bra019774.1-P	Field mustard	cytosol	13.04	23.48
Bra023487.1-P	Field mustard	mitochondrion	14.49	23.44
Bra008737.1-P	Field mustard	mitochondrion	14.17	22.92
Bra026966.1-P	Field mustard	cytosol	8.7	22.59
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	11.43	17.88

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:Bra011506	EnsemblPlants:Bra011506.1
EnsemblPlants:Bra011506.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	UniProt:M4D4U9	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI00025458CB	SEG:seg

Description

AT4G34200 (E=3e-289) EDA9 | EDA9 (embryo sac development arrest 9); ATP binding

Coordinates

chrA01:+:1906310..1909509

Molecular Weight (calculated)

65364.5 Da

IEP (calculated)

6.433

GRAVY (calculated)

0.190

Length

621 amino acids

Sequence
(BLAST)

001: MSATASSAIS VATKPLKSLS LSTRSPLPSA ASVAFPTPRR RLVLVACTTG DGSKPTILVA EKLGEAGVKL LEDFANEDCS YNLTPEELNT KISLCDALIV
101: RSGTKVGREV FESSRGRLKV VGRAGVGIDN VDLSAATEFG CLVVNAPTAN TIAAAEHGIA LLAGMARNVA QADASVKAGE WKRNKYVGVS LVGKTLAVMG
201: FGKVGTEVAR RAKGLGMRVI AHDPYAPADR AHAIGVDLVS FDEALATADF ISLHMPLTPA TSKILNDETF AKMKKGVRIV NVARGGVIDE DALVRALDAG
301: IVAQAALDVF TKEPPAKDSP LVQHERVTVT PHLGASTMEA QEGVAIEIAE AVVGALNGEL AATAVNAPMV SAEVLTELKP YVILAEKLGR LAVQLVAGGS
401: GVKNVKVSYT SARATDDLDT RLLRAMITKG IIEPISDVYV NLVNADFTAK QRGLRISEGR VLLDGSPENP LETITVQLGN VESKFASSLS ESGEVKVEGR
501: VKDGVPHLTK VGSFEVDVTL EGSIILCRQV DQPGMIGTVG SILGESNVNV NFMSVGRIAP RKQAIMAIGV DDQPSKETLK KIGEIPAVEE FVFLKTVGKL
601: LRIILIAEIM VEIIPSLLQT F

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.