CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35731	Soybean	nucleus	96.47	96.63
HORVU2Hr1G113180.3	Barley	cytosol	64.54	84.77
CDY57737	Canola	cytosol	24.03	83.63
Solyc03g112070.2.1	Tomato	plastid	83.87	83.17
PGSC0003DMT400046698	Potato	plastid	83.53	82.83
CDX72462	Canola	plastid	81.85	81.44
CDY49286	Canola	plastid	81.85	81.44
Bra017637.1-P	Field mustard	plastid	81.68	81.27
AT3G19480.1	Thale cress	plastid	80.17	81.12
CDX75409	Canola	plastid	81.01	80.87
CDX82295	Canola	plastid	79.66	80.75
CDY22972	Canola	plastid	79.66	80.75
Bra001747.1-P	Field mustard	plastid	79.33	80.41
VIT_03s0180g00130.t01	Wine grape	cytosol	87.73	79.94
Bra034616.1-P	Field mustard	plastid	80.67	79.87
CDX76268	Canola	plastid	80.5	79.83
AT4G34200.1	Thale cress	plastid	80.17	79.1
Zm00001d026472_P001	Maize	plastid	80.0	77.78
Os04t0650800-01	Rice	plastid	79.83	77.49
EES12983	Sorghum	plastid	80.67	77.42
GSMUA_Achr4P11440_001	Banana	plastid	73.95	77.33
Bra011506.1-P	Field mustard	plastid	80.67	77.29
CDY57736	Canola	plastid	49.24	76.9
GSMUA_Achr4P04100_001	Banana	plastid	74.79	76.72
CDX69034	Canola	plastid	81.34	76.58
Zm00001d002051_P001	Maize	plastid	80.5	76.52
TraesCS2A01G508900.1	Wheat	plastid	78.15	75.49
KRH47008	Soybean	endoplasmic reticulum	74.62	71.27
KRH44645	Soybean	nucleus	73.95	70.85
KRH23702	Soybean	extracellular	63.53	64.51
KRH47286	Soybean	nucleus	14.96	28.43
KRH48312	Soybean	cytosol	15.63	27.6
KRH36064	Soybean	nucleus	17.65	27.2
KRG90684	Soybean	nucleus	17.31	26.68
KRH65202	Soybean	cytosol	10.08	26.67
KRH44352	Soybean	peroxisome	6.72	26.14
KRH48310	Soybean	cytosol	14.45	25.75
KRH09880	Soybean	cytosol	13.11	25.74
KRH62463	Soybean	mitochondrion	16.13	24.55
KRH48311	Soybean	cytosol	13.45	23.95
KRH48313	Soybean	cytosol	13.11	23.21
KRG93315	Soybean	mitochondrion	14.12	22.4
KRH65201	Soybean	plastid	10.76	22.3
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	14.12	21.65
KRG93317	Soybean	nucleus	13.78	21.08

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:100808771	Gene3D:3.30.1330.90	Gene3D:3.30.70.260
Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	EMBL:ACUP02012660	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_20G129400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	UniProt:I1NFX7	InterPro:IPR002912	InterPro:IPR029009	EnsemblPlants:KRG91030
ProteinID:KRG91030	ProteinID:KRG91030.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI000233F4AA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:37059925..37063160

Molecular Weight (calculated)

62822.3 Da

IEP (calculated)

6.533

GRAVY (calculated)

0.173

Length

595 amino acids

Sequence
(BLAST)

001: MATATSQTLR FQSPSLSLSS KLPLSSAFSV SLRPRHRGSR PLVLVVSAGL DAKPTVLVAE KLGDAGLKLL KDFANVDCSY NLSTEELCTK ISLCDALIVR
101: SGTKVSREVF ESSAGRLKVV GRAGVGIDNV DLAAATEHGC LVVNAPTANT VAAAEHGIAL LAAMARNIAQ ADASVKAGKW QRNKYVGVSL VGKTLAILGF
201: GKVGSEVARR AKGLGMTVIA HDPYAPADRA RAVGVELVTF EEAIATADFI SLHMPLTAAT SKMLNDETFA KMKKGVRIVN VARGGVIDED ALVRALDSGI
301: VAQAALDVFT EEPPPKDSKL ILHELVTATP HLGASTMEAQ EGVAIEIAEA VLGALKGELA ATAVNAPMVP SEVLTELKPF VDLAEKLGRL AVQLVAGGSG
401: VKTVKVTYAT SRAPDDLDTR LLRAMITKGL IEPISSVFVN LVNADFTAKQ RGIRITEERV ILDGSPENPL EFIQVQIANV ESRFASAISD SGEIKVEGRV
501: KDDIPHLTKV GSFDVDVSLE GSIILCRQVD QPGMIGKVGS VLGEENVNVS FMSVGRIAPR KQAVMAIGVD EQPSKESLKK IGEIPSVEEF VFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.