CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 1
peroxisome 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36064	Soybean	nucleus	96.89	96.89
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	90.93	90.93
Solyc01g111630.2.1	Tomato	nucleus, plastid	88.86	88.86
AT1G68010.2	Thale cress	cytosol	88.86	88.63
PGSC0003DMT400015828	Potato	cytosol	88.34	88.34
Bra004055.1-P	Field mustard	cytosol	87.56	87.56
CDY07405	Canola	cytosol	87.56	87.56
Bra004275.1-P	Field mustard	cytosol	87.31	87.31
Os02t0101500-02	Rice	extracellular, mitochondrion	86.27	86.27
TraesCS6A01G000400.1	Wheat	peroxisome	85.49	85.49
TraesCS6B01G004400.1	Wheat	peroxisome	85.49	85.49
TraesCS6D01G001700.1	Wheat	golgi, plastid	85.49	85.49
GSMUA_Achr5P18940_001	Banana	cytosol	34.72	85.35
KXG29243	Sorghum	cytosol	83.68	84.78
CDY04198	Canola	cytosol	86.27	84.52
GSMUA_Achr5P18950_001	Banana	cytosol	47.93	82.22
HORVU6Hr1G017010.1	Barley	cytosol	22.54	81.31
CDX96054	Canola	mitochondrion	87.82	74.02
HORVU6Hr1G000640.1	Barley	cytosol	54.66	69.64
TraesCS5B01G226200.1	Wheat	cytosol	24.35	69.63
HORVU6Hr1G000650.2	Barley	peroxisome	34.2	68.39
Zm00001d014919_P002	Maize	mitochondrion	76.42	68.29
CDY01876	Canola	endoplasmic reticulum, plasma membrane	87.05	48.48
KRH44352	Soybean	peroxisome	12.69	32.03
KRH47286	Soybean	nucleus	24.61	30.35
KRH09880	Soybean	cytosol	20.73	26.4
KRH48310	Soybean	cytosol	19.43	22.46
KRH48312	Soybean	cytosol	18.91	21.66
KRH48311	Soybean	cytosol	18.39	21.26
KRG93315	Soybean	mitochondrion	20.21	20.8
KRH65202	Soybean	cytosol	11.92	20.44
KRH48313	Soybean	cytosol	17.36	19.94
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	19.69	19.59
KRG93317	Soybean	nucleus	19.69	19.54
KRH65201	Soybean	plastid	14.51	19.51
KRH62463	Soybean	mitochondrion	19.69	19.44
KRH35731	Soybean	nucleus	26.68	17.34
KRG91030	Soybean	endoplasmic reticulum	26.68	17.31
KRH23702	Soybean	extracellular	26.17	17.24
KRH44645	Soybean	nucleus	25.91	16.1
KRH47008	Soybean	endoplasmic reticulum	25.91	16.05

Protein Annotations

MapMan:1.3.6	Gene3D:3.40.50.720	EntrezGene:548099	EMBL:ACUP02012633	EMBL:AF503360	EMBL:BT095990
InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_20G107800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616	GO:GO:0016618
GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	EnsemblPlants:KRG90684	ProteinID:KRG90684	ProteinID:KRG90684.1
ProteinID:KRG90685.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996
PANTHER:PTHR10996:SF137	UniProt:Q84L66	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI000005D510	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:35037239..35041551

Molecular Weight (calculated)

42203.3 Da

IEP (calculated)

7.544

GRAVY (calculated)

-0.006

Length

386 amino acids

Sequence
(BLAST)

001: MAKPVSIEVW NPSGKYRVVS TKPMPGTRWI NLLVQNDVRL EICTEKKTIL SVEDIIALIG DKCDGVIGQL TEDWGEQLFS TLSKAGGKAF SNMAVGYNNV
101: DVDAANKYGV AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRAGLY DGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYYDLYQS
201: TRLEKFITAY ATFLKASGET PVTWKRAATM DEVLQEADII SLHPVLDKTT YHLVNKERLA KMKKEAILIN CSRGPVIDEA ALVEHLKQNP MFRVGLDVFE
301: EEPYMKPGLA ELKNAIVVPH IASASKWTRE GMATLAALNV LGKIKGYPVW FDANRVEPFL NENAQPPAAS PSIVNAKALG LPTSKL

Best Arabidopsis Sequence Match ( AT1G68010.1 )
(BLAST)

001: MAKPVSIEVY NPNGKYRVVS TKPMPGTRWI NLLVDQGCRV EICHLKKTIL SVEDIIDLIG DKCDGVIGQL TEDWGETLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGI AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRGGLY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYFDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLREADLI SLHPVLDKTT YHLVNKERLA MMKKEAILVN CSRGPVIDEA ALVEHLKENP MFRVGLDVFE
301: EEPFMKPGLA DTKNAIVVPH IASASKWTRE GMATLAALNV LGRVKGYPIW HDPNRVDPFL NENASPPNAS PSIVNSKALG LPVSKL

Arabidopsis Description

HPRhydroxypyruvate reductase [Source:TAIR;Acc:AT1G68010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.