Factsheet for Solyc01g111630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 3
plastid 1
peroxisome 5

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015828	Potato	cytosol	98.7	98.7
Bra004055.1-P	Field mustard	cytosol	90.93	90.93
Bra004275.1-P	Field mustard	cytosol	90.93	90.93
CDY07405	Canola	cytosol	90.93	90.93
AT1G68010.2	Thale cress	cytosol	90.41	90.18
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	89.9	89.9
KRH36064	Soybean	nucleus	89.64	89.64
Os02t0101500-02	Rice	extracellular, mitochondrion	89.12	89.12
KRG90684	Soybean	nucleus	88.86	88.86
TraesCS6A01G000400.1	Wheat	peroxisome	88.6	88.6
TraesCS6B01G004400.1	Wheat	peroxisome	88.6	88.6
TraesCS6D01G001700.1	Wheat	golgi, plastid	88.6	88.6
KXG29243	Sorghum	cytosol	86.79	87.93
CDY04198	Canola	cytosol	89.38	87.56
GSMUA_Achr5P18940_001	Banana	cytosol	35.23	86.62
HORVU6Hr1G017010.1	Barley	cytosol	23.32	84.11
GSMUA_Achr5P18950_001	Banana	cytosol	48.45	83.11
CDX96054	Canola	mitochondrion	91.45	77.07
TraesCS5B01G226200.1	Wheat	cytosol	25.65	73.33
HORVU6Hr1G000650.2	Barley	peroxisome	35.23	70.47
HORVU6Hr1G000640.1	Barley	cytosol	55.18	70.3
Zm00001d014919_P002	Maize	mitochondrion	78.5	70.14
CDY01876	Canola	endoplasmic reticulum, plasma membrane	90.67	50.51
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	24.61	30.35
Solyc12g044260.1.1	Tomato	cytosol	23.32	28.75
Solyc12g044250.1.1	Tomato	vacuole	23.32	28.57
Solyc03g120680.2.1	Tomato	nucleus	22.02	27.33
Solyc08g080030.2.1	Tomato	cytosol	18.91	27.04
Solyc01g093990.2.1	Tomato	cytosol	20.21	24.15
Solyc11g020060.1.1	Tomato	cytosol	17.1	23.49
Solyc03g120660.2.1	Tomato	cytosol	9.33	22.78
Solyc03g044670.1.1	Tomato	cytosol	11.92	19.17
Solyc02g086880.2.1	Tomato	plastid	18.65	18.9
Solyc03g112070.2.1	Tomato	plastid	26.17	16.83
Solyc10g049890.1.1	Tomato	plastid	25.91	16.81
Solyc03g123830.2.1	Tomato	plastid	26.68	16.43

Protein Annotations

MapMan:1.3.6	Gene3D:3.40.50.720	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	UniProt:K4B425	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF137	SUPFAM:SSF51735
SUPFAM:SSF52283	EnsemblPlantsGene:Solyc01g111630.2	EnsemblPlants:Solyc01g111630.2.1	UniParc:UPI0002767712	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:97848444..97852193

Molecular Weight (calculated)

42261.3 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.036

Length

386 amino acids

Sequence
(BLAST)

001: MAKPVQIEVW NPNGKYRVVS TKSMPGTRWI NLLIQQDCRL EICTEKKTIL SVDDILALIG DRCDGVIGQL TEDWGDTLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGV AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRAGKY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYYDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLQEADVI SLHPILDKTT YHLVNKERLA LMKKEAILVN CSRGPVIDEV ALVEHLRENP MFRVGLDVFE
301: DEPYMKPGLA DMKNAVVVPH IASASKWTRE GMATLAALNV LGKIKGYPIW SNPNSVEPFL NENAPPPAAC PSIVNSKALG LPVSKL

Best Arabidopsis Sequence Match ( AT1G68010.1 )
(BLAST)

001: MAKPVSIEVY NPNGKYRVVS TKPMPGTRWI NLLVDQGCRV EICHLKKTIL SVEDIIDLIG DKCDGVIGQL TEDWGETLFS ALSKAGGKAF SNMAVGYNNV
101: DVEAANKYGI AVGNTPGVLT ETTAELAASL SLAAARRIVE ADEFMRGGLY EGWLPHLFVG NLLKGQTVGV IGAGRIGSAY ARMMVEGFKM NLIYFDLYQS
201: TRLEKFVTAY GQFLKANGEQ PVTWKRASSM EEVLREADLI SLHPVLDKTT YHLVNKERLA MMKKEAILVN CSRGPVIDEA ALVEHLKENP MFRVGLDVFE
301: EEPFMKPGLA DTKNAIVVPH IASASKWTRE GMATLAALNV LGRVKGYPIW HDPNRVDPFL NENASPPNAS PSIVNSKALG LPVSKL

Arabidopsis Description

HPRhydroxypyruvate reductase [Source:TAIR;Acc:AT1G68010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.