Factsheet for Solyc03g120680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044250.1.1	Tomato	vacuole	69.45	68.57
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	67.85	67.41
AT1G79870.1	Thale cress	cytosol	63.02	62.62
CDX79406	Canola	cytosol	63.02	62.62
CDX67931	Canola	cytosol	63.02	62.62
Bra003537.1-P	Field mustard	cytosol	62.7	62.3
Solyc12g044260.1.1	Tomato	cytosol	62.38	61.98
CDX87280	Canola	cytosol	61.74	61.94
Bra035206.1-P	Field mustard	cytosol	61.74	61.94
GSMUA_Achr3P03420_001	Banana	cytosol	62.7	61.71
CDY58781	Canola	cytosol	61.41	61.02
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	61.09	60.13
TraesCS3A01G153500.1	Wheat	peroxisome	61.09	59.75
TraesCS4B01G324200.1	Wheat	peroxisome	60.13	59.18
GSMUA_Achr3P31530_001	Banana	cytosol	59.49	58.54
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	59.49	58.54
KXG31500	Sorghum	cytosol	59.16	58.41
Os01t0228600-01	Rice	extracellular	57.23	56.33
Zm00001d030544_P001	Maize	cytosol, extracellular	56.59	55.0
Solyc03g120660.2.1	Tomato	cytosol	27.01	53.16
Solyc08g080030.2.1	Tomato	cytosol	41.16	47.41
Solyc01g093990.2.1	Tomato	cytosol	45.98	44.27
HORVU3Hr1G031200.3	Barley	cytosol, mitochondrion	60.77	38.89
Solyc11g020060.1.1	Tomato	cytosol	23.15	25.62
Solyc03g044670.1.1	Tomato	cytosol	17.36	22.5
Solyc01g111630.2.1	Tomato	nucleus, plastid	27.33	22.02
Solyc02g086880.2.1	Tomato	plastid	22.51	18.37
Solyc03g112070.2.1	Tomato	plastid	25.4	13.17
Solyc10g049890.1.1	Tomato	plastid	24.12	12.61
Solyc03g123830.2.1	Tomato	plastid	24.12	11.96
TraesCS3D01G160900.1	Wheat	cytosol	6.75	11.29

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	UniProt:K4BML7	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF139	SUPFAM:SSF51735
SUPFAM:SSF52283	EnsemblPlantsGene:Solyc03g120680.2	EnsemblPlants:Solyc03g120680.2.1	UniParc:UPI0002766D74	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:68988318..68990862

Molecular Weight (calculated)

33759.7 Da

IEP (calculated)

6.043

GRAVY (calculated)

0.041

Length

311 amino acids

Sequence
(BLAST)

001: MDEIGVLLMR PLSNYIQQEL AKRFTLFKYW EIPSESLKLH SDIIRAVVGN GVQGANSALI DSLPRLEIVS SHSSGLDKID LVKCKERGIR VTSTPNGPTD
101: DVADMAILLA IATLRRICVA DRFVRNGIWQ EKDFNLTAKF SGKSVGIVGL GRIGSAIAKR AEAFGCPISY HSRTQKPEST YTYYSHVIDL ASNCQILVVA
201: CALTDETHHI INREVIDALG PNGIVINIAR GSHIDEPELV SALAEGRLGG AGLDGLEHEP EVPTQLASLD NVVLSPHTAA GTVETRREMA DLVIANLEAY
301: FSNKPLLTPV L

Best Arabidopsis Sequence Match ( AT1G79870.1 )
(BLAST)

001: MESIGVLMMC PMSSYLENEL EKRFNLLRFW TSPEKSVLLE THRNSIRAVV GNASAGADAQ LISDLPNLEI VSSFSVGLDK IDLGKCKEKG IRVTNTPDVL
101: TEDVADLAIG LILALLRRLC ECDRYVRSGK WKQGEFQLTT KFSGKSVGII GLGRIGTAIA KRAEAFSCPI NYYSRTIKPD VAYKYYPTVV DLAQNSDILV
201: VACPLTEQTR HIVDRQVMDA LGAKGVLINI GRGPHVDEQE LIKALTEGRL GGAALDVFEQ EPHVPEELFG LENVVLLPHV GSGTVETRNA MADLVVGNLE
301: AHFSGKSLLT PVV

Arabidopsis Description

HPR2Glyoxylate/hydroxypyruvate reductase A HPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.