Factsheet for Solyc03g120670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044260.1.1	Tomato	cytosol	84.34	84.34
VIT_09s0002g04300.t01	Wine grape	cytosol	81.15	81.15
CDX79406	Canola	cytosol	79.55	79.55
KRH47286	Soybean	nucleus	78.91	78.91
AT1G79870.1	Thale cress	cytosol	78.59	78.59
Bra003537.1-P	Field mustard	cytosol	78.27	78.27
CDX67931	Canola	cytosol	78.27	78.27
Bra035206.1-P	Field mustard	cytosol	77.32	78.06
CDX87280	Canola	cytosol	77.32	78.06
CDY58781	Canola	cytosol	77.32	77.32
Solyc12g044250.1.1	Tomato	vacuole	77.0	76.51
GSMUA_Achr3P03420_001	Banana	cytosol	74.76	74.05
KRH44352	Soybean	peroxisome	36.1	73.86
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	73.16	72.47
TraesCS3A01G153500.1	Wheat	peroxisome	73.16	72.01
KXG31500	Sorghum	cytosol	71.89	71.43
TraesCS4B01G324200.1	Wheat	peroxisome	71.25	70.57
GSMUA_Achr3P31530_001	Banana	cytosol	69.01	68.35
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	69.01	68.35
Solyc03g120680.2.1	Tomato	nucleus	67.41	67.85
Os01t0228600-01	Rice	extracellular	67.41	66.77
Solyc03g120660.2.1	Tomato	cytosol	31.95	63.29
Zm00001d030544_P001	Maize	cytosol, extracellular	63.58	62.19
Solyc08g080030.2.1	Tomato	cytosol	41.85	48.52
HORVU3Hr1G031200.3	Barley	cytosol, mitochondrion	73.16	47.12
Solyc01g093990.2.1	Tomato	cytosol	44.41	43.03
Solyc11g020060.1.1	Tomato	cytosol	23.64	26.33
Solyc01g111630.2.1	Tomato	nucleus, plastid	30.35	24.61
Solyc03g044670.1.1	Tomato	cytosol	17.57	22.92
Solyc02g086880.2.1	Tomato	plastid	21.41	17.59
Solyc03g112070.2.1	Tomato	plastid	27.8	14.5
TraesCS3D01G160900.1	Wheat	cytosol	8.31	13.98
Solyc10g049890.1.1	Tomato	plastid	26.2	13.78
Solyc03g123830.2.1	Tomato	plastid	25.88	12.92

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	UniProt:K4BML6	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF139	SUPFAM:SSF51735
SUPFAM:SSF52283	EnsemblPlantsGene:Solyc03g120670.2	EnsemblPlants:Solyc03g120670.2.1	UniParc:UPI0002766D73	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:68985466..68988208

Molecular Weight (calculated)

34294.8 Da

IEP (calculated)

6.514

GRAVY (calculated)

0.028

Length

313 amino acids

Sequence
(BLAST)

001: MESIGVLMAC PMSSYLEQEL DKRFKLFRFW NVPQKNEFLS QHADSIRAVV GNAFAGADAE LINSLPKLEI VSSFSVGLDK IDLNKCKEKG IRVTNTPDVL
101: TEDVADLAIG LMLAVLRRIC ECDRHVRKGL WKSGDFKLTS KFSGKSVGII GLGRIGLAIA KRAEAFGCPI SYYTRSEKPN TNYKYYPSVV ELASNCQILV
201: VACALTPETR HIVNREVMEA LGSKGILINI GRGPHVDEKE LVSALLEGRL GGAGLDVFEN EPEVPEQLFG LENVVLLPHV GSGTEETRKA MADLVLGNLE
301: AHFLNKPLLT PVV

Best Arabidopsis Sequence Match ( AT1G79870.1 )
(BLAST)

001: MESIGVLMMC PMSSYLENEL EKRFNLLRFW TSPEKSVLLE THRNSIRAVV GNASAGADAQ LISDLPNLEI VSSFSVGLDK IDLGKCKEKG IRVTNTPDVL
101: TEDVADLAIG LILALLRRLC ECDRYVRSGK WKQGEFQLTT KFSGKSVGII GLGRIGTAIA KRAEAFSCPI NYYSRTIKPD VAYKYYPTVV DLAQNSDILV
201: VACPLTEQTR HIVDRQVMDA LGAKGVLINI GRGPHVDEQE LIKALTEGRL GGAALDVFEQ EPHVPEELFG LENVVLLPHV GSGTVETRNA MADLVVGNLE
301: AHFSGKSLLT PVV

Arabidopsis Description

HPR2Glyoxylate/hydroxypyruvate reductase A HPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.