Factsheet for Solyc12g044250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019586	Potato	extracellular	92.7	92.7
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	76.51	77.0
AT1G79870.1	Thale cress	cytosol	72.38	72.84
Solyc12g044260.1.1	Tomato	cytosol	72.06	72.52
CDX67931	Canola	cytosol	72.06	72.52
CDX79406	Canola	cytosol	72.06	72.52
Bra003537.1-P	Field mustard	cytosol	71.75	72.2
CDX87280	Canola	cytosol	70.79	71.94
Bra035206.1-P	Field mustard	cytosol	70.79	71.94
CDY58781	Canola	cytosol	70.48	70.93
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	69.52	69.97
Solyc03g120680.2.1	Tomato	nucleus	68.57	69.45
GSMUA_Achr3P03420_001	Banana	cytosol	68.57	68.35
KRH09880	Soybean	cytosol	64.76	67.33
TraesCS3A01G153500.1	Wheat	peroxisome	67.3	66.67
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	66.35	66.14
TraesCS5A01G496700.1	Wheat	cytosol, peroxisome, plastid	65.71	65.51
TraesCS4B01G324200.1	Wheat	peroxisome	65.4	65.19
GSMUA_Achr3P31530_001	Banana	cytosol	63.17	62.97
KXG31500	Sorghum	cytosol	62.86	62.86
Os01t0228600-01	Rice	extracellular	62.22	62.03
Solyc03g120660.2.1	Tomato	cytosol	30.48	60.76
Zm00001d030544_P001	Maize	cytosol, extracellular	60.95	60.0
Solyc08g080030.2.1	Tomato	cytosol	42.86	50.0
HORVU3Hr1G031200.3	Barley	cytosol, mitochondrion	66.67	43.21
Solyc01g093990.2.1	Tomato	cytosol	44.13	43.03
Solyc11g020060.1.1	Tomato	cytosol	22.54	25.27
Solyc01g111630.2.1	Tomato	nucleus, plastid	28.57	23.32
Solyc03g044670.1.1	Tomato	cytosol	17.14	22.5
Solyc02g086880.2.1	Tomato	plastid	23.49	19.42
Solyc03g112070.2.1	Tomato	plastid	27.3	14.33
Solyc10g049890.1.1	Tomato	plastid	25.71	13.61
TraesCS3D01G160900.1	Wheat	cytosol	7.62	12.9
Solyc03g123830.2.1	Tomato	plastid	24.76	12.44

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0016618	GO:GO:0030267	GO:GO:0051287	GO:GO:0055114	UniProt:K4DFB3	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065	PANTHER:PTHR10996	PANTHER:PTHR10996:SF139	SUPFAM:SSF51735
SUPFAM:SSF52283	EnsemblPlantsGene:Solyc12g044250.1	EnsemblPlants:Solyc12g044250.1.1	UniParc:UPI00027695AE	:	:

Description

No Description!

Coordinates

chr12:+:38733499..38735579

Molecular Weight (calculated)

34015.3 Da

IEP (calculated)

4.961

GRAVY (calculated)

0.262

Length

315 amino acids

Sequence
(BLAST)

001: MAMAKIGVLV ICPMLSYLEE ELDKRFNLFR LWEAPSKSEF LTQNSDSIRA VVGSASFGAD SELIDALPNL EIVSSFCVGL DKIDLVKCKE RGIRVTNTPD
101: VLTDDVADAA IGLILATLRR ICVADGFVRS GLWKNGDFEL TSKFSGKSVG IIGLGRIGSA IAKRAEAFGC PISYHSRSKK PNINYKYYST VVDLAANSEI
201: LVVACALTEE TRNIVNRIVL DALGPKGIII NIGRGAHVDE SELVAALIEG RIGGAGLDVY QREPEVPEQL FGLENVVLLS HVASDTVETC TAMADLVIAN
301: LEAHFLHKPL LTPVL

Best Arabidopsis Sequence Match ( AT1G79870.1 )
(BLAST)

001: MESIGVLMMC PMSSYLENEL EKRFNLLRFW TSPEKSVLLE THRNSIRAVV GNASAGADAQ LISDLPNLEI VSSFSVGLDK IDLGKCKEKG IRVTNTPDVL
101: TEDVADLAIG LILALLRRLC ECDRYVRSGK WKQGEFQLTT KFSGKSVGII GLGRIGTAIA KRAEAFSCPI NYYSRTIKPD VAYKYYPTVV DLAQNSDILV
201: VACPLTEQTR HIVDRQVMDA LGAKGVLINI GRGPHVDEQE LIKALTEGRL GGAALDVFEQ EPHVPEELFG LENVVLLPHV GSGTVETRNA MADLVVGNLE
301: AHFSGKSLLT PVV

Arabidopsis Description

HPR2Glyoxylate/hydroxypyruvate reductase A HPR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.