Factsheet for Solyc10g049890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059818	Potato	plastid	98.82	98.82
Solyc03g112070.2.1	Tomato	plastid	87.23	86.5
HORVU2Hr1G113180.3	Barley	cytosol	63.03	82.78
CDX75409	Canola	plastid	81.68	81.54
CDY57737	Canola	cytosol	23.19	80.7
Bra034616.1-P	Field mustard	plastid	81.51	80.7
CDX76268	Canola	plastid	81.34	80.67
CDX72462	Canola	plastid	80.34	79.93
CDY49286	Canola	plastid	80.34	79.93
Bra017637.1-P	Field mustard	plastid	80.17	79.77
CDY57736	Canola	plastid	50.59	79.0
AT4G34200.1	Thale cress	plastid	80.0	78.94
Bra011506.1-P	Field mustard	plastid	81.51	78.1
CDY22972	Canola	plastid	76.81	77.85
VIT_03s0180g00130.t01	Wine grape	cytosol	85.21	77.64
CDX82295	Canola	plastid	76.47	77.51
Bra001747.1-P	Field mustard	plastid	76.13	77.17
CDX69034	Canola	plastid	81.68	76.9
GSMUA_Achr4P11440_001	Banana	plastid	73.28	76.63
AT3G19480.1	Thale cress	plastid	75.46	76.36
Os04t0650800-01	Rice	plastid	78.66	76.35
EES12983	Sorghum	plastid	79.16	75.97
Zm00001d026472_P001	Maize	plastid	77.98	75.82
Zm00001d002051_P001	Maize	plastid	78.66	74.76
TraesCS2A01G508900.1	Wheat	plastid	77.31	74.68
GSMUA_Achr4P04100_001	Banana	plastid	72.44	74.31
Solyc03g123830.2.1	Tomato	plastid	74.79	70.97
Solyc11g020060.1.1	Tomato	cytosol	12.77	27.05
Solyc03g120670.2.1	Tomato	cytosol, nucleus, plastid	13.78	26.2
Solyc08g080030.2.1	Tomato	cytosol	11.76	25.93
Solyc01g111630.2.1	Tomato	nucleus, plastid	16.81	25.91
Solyc12g044250.1.1	Tomato	vacuole	13.61	25.71
Solyc01g093990.2.1	Tomato	cytosol	13.78	25.39
Solyc12g044260.1.1	Tomato	cytosol	13.11	24.92
Solyc03g120680.2.1	Tomato	nucleus	12.61	24.12
Solyc03g044670.1.1	Tomato	cytosol	9.58	23.75
Solyc03g120660.2.1	Tomato	cytosol	5.88	22.15
Solyc02g086880.2.1	Tomato	plastid	13.78	21.52

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912
InterPro:IPR029009	UniProt:K4D0E5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	InterPro:PGDH
ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14
SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	EnsemblPlantsGene:Solyc10g049890.1
EnsemblPlants:Solyc10g049890.1.1	TIGRFAMs:TIGR01327	UniParc:UPI000276A219	SEG:seg	:	:

Description

D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4D0E5]

Coordinates

chr10:+:47116064..47119634

Molecular Weight (calculated)

62547.6 Da

IEP (calculated)

7.182

GRAVY (calculated)

0.159

Length

595 amino acids

Sequence
(BLAST)

001: MAASASSAIN LSIKPSHTSL SWKTHLSSTS ALAVSPLSGH RHYPRFVIYA VGDKPTVLVA EKLGEAGVNL LKEFADVDCS YNLTPEELCN KISLCDALIV
101: RSGTKVSREV FESSGGRLKV VGRAGVGIDN VDLAAATEHG CLVVNAPTAN TVAAAEHGIS LLTAMARNVA QADASVKAGK WLRNKYVGVS LVGKTLAVMG
201: FGKVGSEVAR RAKGLGMHVI AHDPYAPADR ARAIGVELVS FDKAIASADF ISLHMPLTPA TNKVLNDETF AKMKKGVRIV NVARGGVIDE DALVRALDAG
301: IVAQAALDVF TVEPPKDSKL VQHENVTATP HLGASTMEAQ EGVAIEIAEA VVGALNGELA ATAVNAPMVP AEVLSELKPF VALAEKLGRL AVQLVAGGSG
401: VKSVKVTYGS ARGPDDLDTR LLRAMITKGL IEPISSSFVN LVNADFTAKQ RGLRIAEQRS LLNGSPESPL EFIQVQISSV ESKFASALSD SGEIRVEGRV
501: KDGIPHLTKV GSFEVDVSLE GSIILCRQVD QPGMIGKVGS ILSEGNVNVS FMSVGRVAPR KHAVMAIGVD DQPSNEILKR IGEIPAVEEF VYLKI

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.