CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12275	Canola	cytosol	56.38	98.25
CDY57737	Canola	cytosol	28.02	97.66
CDY49286	Canola	plastid	95.97	95.65
Bra011506.1-P	Field mustard	plastid	99.5	95.49
CDX72462	Canola	plastid	95.81	95.48
CDX76268	Canola	plastid	95.3	94.67
CDX69034	Canola	plastid	99.5	93.83
CDY57736	Canola	plastid	57.72	90.29
HORVU2Hr1G113180.3	Barley	cytosol	63.09	83.0
Solyc10g049890.1.1	Tomato	plastid	81.54	81.68
PGSC0003DMT400059818	Potato	plastid	81.54	81.68
KRH35731	Soybean	nucleus	81.38	81.65
KRG91030	Soybean	endoplasmic reticulum	80.87	81.01
CDY22972	Canola	plastid	76.51	77.68
CDX82295	Canola	plastid	76.34	77.51
GSMUA_Achr4P11440_001	Banana	plastid	71.48	74.87
Os04t0650800-01	Rice	plastid	76.85	74.71
EES12983	Sorghum	plastid	77.52	74.52
Zm00001d026472_P001	Maize	plastid	76.51	74.51
VIT_03s0180g00130.t01	Wine grape	cytosol	81.38	74.27
TraesCS2A01G508900.1	Wheat	plastid	76.34	73.86
GSMUA_Achr4P04100_001	Banana	plastid	71.31	73.28
Zm00001d002051_P001	Maize	plastid	76.85	73.16
CDX83893	Canola	plastid	72.32	69.29
CDX96754	Canola	plastid	72.15	69.24
CDY17092	Canola	cytosol	5.2	29.25
CDY54697	Canola	mitochondrion	6.71	27.03
CDX87280	Canola	cytosol	13.42	25.81
CDY58781	Canola	cytosol	13.42	25.56
CDY07405	Canola	cytosol	16.44	25.39
CDY57070	Canola	cytosol	13.59	25.16
CDX68275	Canola	mitochondrion	15.6	25.0
CDY50445	Canola	mitochondrion	15.6	24.93
CDY16011	Canola	cytosol, peroxisome, plastid	12.25	24.66
CDY04198	Canola	cytosol	16.28	24.62
CDX67931	Canola	cytosol	12.58	23.96
CDX79406	Canola	cytosol	12.58	23.96
CDX85582	Canola	mitochondrion	15.27	23.76
CDX98054	Canola	cytosol	13.59	23.48
CDY09885	Canola	mitochondrion	14.93	23.24
CDX69558	Canola	mitochondrion	14.93	23.18
CDX91020	Canola	mitochondrion	14.77	22.92
CDY26572	Canola	cytosol	9.06	22.41
CDX96054	Canola	mitochondrion	16.78	21.83
CDY16012	Canola	cytosol, nucleus, peroxisome	8.56	21.16
CDY26571	Canola	plastid	10.4	20.95
CDY16010	Canola	cytosol, nucleus, plastid	13.93	15.06
CDY01876	Canola	endoplasmic reticulum, plasma membrane	16.78	14.43
CDY26570	Canola	cytosol	10.57	14.0

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	GO:A0A068FB16	UniProt:A0A068FB16	InterPro:ACT_dom	ProteinID:AID60131.1	InterPro:ASB_dom_sf
InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlants:CDX75409	ProteinID:CDX75409	ProteinID:CDX75409.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00121296001
InterPro:IPR002912	InterPro:IPR029009	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826
InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF14	MetaCyc:PWY-5041	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniPathway:UPA00135	UniPathway:UPA00314	UniParc:UPI0004A880AB	SEG:seg

Description

BnaA01g02930DD-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A068FB16]

Coordinates

chrLK031804:-:981593..984155

Molecular Weight (calculated)

62598.8 Da

IEP (calculated)

6.431

GRAVY (calculated)

0.149

Length

596 amino acids

Sequence
(BLAST)

001: MSATASSAIS VATKPLKSLS LSTRSPLPSA ASVAFPTPRR RLVLVACTTG DGSKPTILVA EKLGEAGVKL LEDFANVDCS YNLTPEELNT KISLCDALIV
101: RSGTKVGREV FESSRGRLKV VGRAGVGIDN VDLSAATEFG CLVVNAPTAN TIAAAEHGIA LLAGMARNVA QADASVKAGE WKRNKYVGVS LVGKTLAVMG
201: FGKVGTEVAR RAKGLGMRVI AHDPYAPADR AHAIGVDLVS FDEALATADF ISLHMPLTPA TSKILNDETF AKMKKGVRIV NVARGGVIDE DALVRALDAG
301: IVAQAALDVF TKEPPAKDSP LVQHERVTVT PHLGASTMEA QEGVAIEIAE AVVGALNGEL AATAVNAPMV SAEVLTELKP YVILAEKLGR LAVQLVAGGS
401: GVKNVKVSYT SARATDDLDT RLLRAMITKG IIEPISDVYV NLVNADFTAK QRGLRISEER VLLDGSPENP LETITVQLGN VESKFASSLS ESGEVKVEGR
501: VKDGVPHLTK VGSFEVDVTL EGSIILCRQV DQPGMIGTVG SILGESNVNV NFMSVGRIAP RKQAIMAIGV DDQPSKETLK KIGEIPAVEE FVFLKV

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.