CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68275	Canola	mitochondrion	97.05	97.31
AT1G72190.1	Thale cress	mitochondrion	84.99	84.99
VIT_18s0041g01830.t01	Wine grape	cytosol	60.59	65.89
Solyc11g020060.1.1	Tomato	cytosol	49.6	65.84
PGSC0003DMT400071027	Potato	cytosol	52.01	62.99
PGSC0003DMT400085920	Potato	mitochondrion	30.29	61.41
GSMUA_Achr3P21910_001	Banana	cytosol	56.03	61.29
KRH62463	Soybean	mitochondrion	61.93	59.08
EER96197	Sorghum	mitochondrion	56.3	54.55
KXG34859	Sorghum	mitochondrion, plastid	55.5	53.91
Os07t0264100-01	Rice	mitochondrion	53.89	53.74
Os07t0263400-00	Rice	cytosol	40.75	53.52
Solyc03g044670.1.1	Tomato	cytosol	34.05	52.92
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	53.62	52.91
TraesCS5A01G161300.1	Wheat	plastid	53.35	52.65
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	53.35	52.65
Zm00001d005489_P006	Maize	mitochondrion	54.42	51.92
HORVU5Hr1G050350.1	Barley	mitochondrion, plastid	53.35	50.0
TraesCS7B01G373500.1	Wheat	cytosol	12.33	44.23
CDX79406	Canola	cytosol	22.25	26.52
CDX67931	Canola	cytosol	21.72	25.88
CDX87280	Canola	cytosol	21.45	25.81
CDY58781	Canola	cytosol	21.45	25.56
CDY54697	Canola	mitochondrion	9.92	25.0
CDY57070	Canola	cytosol	20.64	23.91
CDY26572	Canola	cytosol	15.01	23.24
CDX98054	Canola	cytosol	21.18	22.9
CDY09885	Canola	mitochondrion	23.32	22.72
CDX69558	Canola	mitochondrion	23.32	22.66
CDY16012	Canola	cytosol, nucleus, peroxisome	14.48	22.41
CDX85582	Canola	mitochondrion	22.52	21.93
CDY17092	Canola	cytosol	6.17	21.7
CDY16011	Canola	cytosol, peroxisome, plastid	17.16	21.62
CDX91020	Canola	mitochondrion	21.98	21.35
CDY57736	Canola	plastid	21.45	21.0
CDY26571	Canola	plastid	16.09	20.27
CDY07405	Canola	cytosol	20.11	19.43
CDY04198	Canola	cytosol	20.11	19.04
CDX96054	Canola	mitochondrion	20.11	16.38
CDY49286	Canola	plastid	25.47	15.89
CDX72462	Canola	plastid	25.47	15.89
CDX75409	Canola	plastid	24.93	15.6
CDX76268	Canola	plastid	24.93	15.5
CDX82295	Canola	plastid	23.59	14.99
CDY22972	Canola	plastid	23.32	14.82
CDX69034	Canola	plastid	24.93	14.72
CDX96754	Canola	plastid	23.86	14.33
CDX83893	Canola	plastid	23.86	14.31
CDY16010	Canola	cytosol, nucleus, plastid	20.91	14.16
CDY26570	Canola	cytosol	14.48	12.0
CDY12275	Canola	cytosol	10.46	11.4
CDY01876	Canola	endoplasmic reticulum, plasma membrane	20.38	10.97
CDY57737	Canola	cytosol	1.07	2.34

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:A0A078IHK4	UniProt:A0A078IHK4	EnsemblPlants:CDY50445	ProteinID:CDY50445
ProteinID:CDY50445.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00096709001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826
ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF2	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI0004EEC6A2
SEG:seg	:	:	:	:	:

Description

BnaC06g24190DBnaC06g24190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHK4]

Coordinates

chrLK032911:-:34905..36809

Molecular Weight (calculated)

41129.9 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.101

Length

373 amino acids

Sequence
(BLAST)

001: MYNIAKTAFR NKNSTVASLF HSHQSRSISR QSSKLVKPER MVEKEEDKKV TRVLFCGPHL PDSYNFTRDY LQPYPFIQAD VAHFRDVPEV IKNYHICVTL
101: LMQMDSFVIS RASNMKLIMQ FGVGLDGVDI DAATKNGIKV ARIPSEGTGN AASCSEMAIY LMLGLLKKQN EMQMSVQSRL LGQPTGGTLL GKTVFILGYG
201: NIGIELAKRL KPFGSRVIAT KRSWPASVMN SDSSLVDEKG SHEDIYTFAS KADIVVVCLR LSKETAEIVN NKFISSMKKG ALLVNIARGG LVNYESAYQS
301: LESGHLGGLG TDVAWSEPFD PNDPILKFKN VIMTPHVAGV TEYSYRSMAK VVGDVALQLH EGLPLTGIEL VNR

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.