Factsheet for PGSC0003DMT400071027

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020060.1.1	Tomato	cytosol	87.66	96.09
Solyc03g044670.1.1	Tomato	cytosol	62.01	79.58
PGSC0003DMT400085920	Potato	mitochondrion	43.51	72.83
VIT_18s0041g01830.t01	Wine grape	cytosol	68.83	61.81
GSMUA_Achr3P21910_001	Banana	cytosol	65.26	58.94
Os07t0263400-00	Rice	cytosol	51.95	56.34
AT1G72190.1	Thale cress	mitochondrion	63.31	52.28
CDY50445	Canola	mitochondrion	62.99	52.01
CDX68275	Canola	mitochondrion	62.66	51.88
KRH62463	Soybean	mitochondrion	65.58	51.66
Bra003888.1-P	Field mustard	mitochondrion	62.01	51.34
KXG34859	Sorghum	mitochondrion, plastid	62.66	50.26
Os07t0264100-01	Rice	mitochondrion	60.71	50.0
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	61.04	49.74
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	60.71	49.47
EER96197	Sorghum	mitochondrion	61.69	49.35
TraesCS5A01G161300.1	Wheat	plastid	60.39	49.21
Zm00001d005489_P006	Maize	mitochondrion	60.71	47.83
HORVU5Hr1G050350.1	Barley	mitochondrion, plastid	60.71	46.98
TraesCS7B01G373500.1	Wheat	cytosol	15.58	46.15
PGSC0003DMT400019584	Potato	cytosol	25.32	24.92
PGSC0003DMT400058518	Potato	cytosol	10.71	23.74
PGSC0003DMT400019586	Potato	extracellular	23.38	22.86
PGSC0003DMT400058520	Potato	cytosol	21.75	20.62
PGSC0003DMT400001303	Potato	mitochondrion	24.68	19.95
PGSC0003DMT400015828	Potato	cytosol	22.73	18.13
PGSC0003DMT400059818	Potato	plastid	25.65	13.28
PGSC0003DMT400046698	Potato	plastid	25.65	13.17
PGSC0003DMT400023675	Potato	plastid	26.95	13.01
PGSC0003DMT400068907	Potato	cytosol	5.52	11.26

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	UniProt:M1CN37	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF02826	EnsemblPlantsGene:PGSC0003DMG400027624	PGSC:PGSC0003DMG400027624	EnsemblPlants:PGSC0003DMT400071027	ScanProsite:PS00671	PANTHER:PTHR42938
PANTHER:PTHR42938:SF2	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI000295CF9A	:	:

Description

Phosphoglycerate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027624]

Coordinates

chr11:-:12775870..12784469

Molecular Weight (calculated)

33037.4 Da

IEP (calculated)

8.324

GRAVY (calculated)

0.124

Length

308 amino acids

Sequence
(BLAST)

001: MTVDDVPLES VPAVIGDYEI CVVKSFRMNS DVLSRAKRMK LIMQFGVGLE GVDINAATKH GIKVAKIPGG ATGNAASCAE MAIYLILGLL RKQNQMKISV
101: EQKKLGEPTG DNLQGKTVFI LGFGNIGIHL AKRLRPFDVK ILATKRSWGR LAQDSSKSEA PSVENGGYSD LVDERGNHAD ILKFASKADI VVCCLAMNSE
201: TIGIVNNDFI SVMRKGAILI NISRGGLLDY DAVLTHLKSG HLGGLGIDVA WTEPFDPDDA ILKFPDVIIT PHVAGVTKLS YRGMAKVVGD VALQLHAGKP
301: FTGIEIVN

Best Arabidopsis Sequence Match ( AT1G72190.1 )
(BLAST)

001: MTIMFKIAKA TLRSRNSSVA SLFYSIQARS ISRQSKVVKI ERIVEKEDMH VTRVLFCGPH FPDSYNFTRE YLQPYPFIKV DVVHYRDVPE VIKNYHICVA
101: MTMQMDSNVI SRASNIKLIM QYGVGLDGVD IDAATKHGIK VARIPSEGTG NAASCSEMAI YLMLGLLKKQ NEMQISLRNR LLGEPTGDTL LGKTVFILGY
201: GNIGIELAKR LKPFGSRVIA TKRFWPASIV DSDSRLVDEK GSHEDIYTFA GKADIVVVCL RLNKETAEIV NKEFICSMKK GALLVNIARG GLINYESAFQ
301: NLESGHLGGL GIDVAWSEPF DPNDPILKFK NVIITPHVAG VTEYSYRSMA KIVGDLALQL HEGLPLTGIE FVN

Arabidopsis Description

D-isomer specific 2-hydroxyacid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IBQ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.