Factsheet for PGSC0003DMT400001303

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086880.2.1	Tomato	plastid	98.95	98.95
VIT_14s0066g01320.t01	Wine grape	mitochondrion	87.93	87.47
Zm00001d011368_P001	Maize	cytosol	64.04	84.43
Zm00001d011367_P001	Maize	cytosol	64.04	84.43
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	62.2	84.04
TraesCS7D01G232300.1	Wheat	mitochondrion	80.58	81.43
TraesCS7B01G130600.1	Wheat	mitochondrion	80.58	81.43
TraesCS7A01G232200.1	Wheat	golgi	80.58	81.43
EER89775	Sorghum	mitochondrion	80.31	81.38
GSMUA_Achr3P01200_001	Banana	mitochondrion	81.63	81.2
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	80.31	81.17
Zm00001d045965_P001	Maize	mitochondrion	80.05	81.12
Os06t0486800-01	Rice	mitochondrion	79.79	80.85
KRG93315	Soybean	mitochondrion	79.53	80.8
Zm00001d053924_P001	Maize	cytosol	49.08	79.24
Os06t0486900-01	Rice	mitochondrion	78.48	79.1
TraesCS6D01G255200.2	Wheat	mitochondrion	77.17	77.98
KRG93317	Soybean	nucleus	79.53	77.89
TraesCS6B01G302400.2	Wheat	mitochondrion	76.9	77.72
TraesCS4D01G007200.1	Wheat	golgi	76.38	77.6
EES07384	Sorghum	mitochondrion	77.95	77.34
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.74	77.32
TraesCS4B01G066400.1	Wheat	mitochondrion	71.65	76.9
Zm00001d014163_P001	Maize	mitochondrion	48.29	76.03
TraesCS5D01G389600.1	Wheat	extracellular, mitochondrion	63.25	65.67
PGSC0003DMT400068907	Potato	cytosol	25.98	65.56
Zm00001d017801_P001	Maize	mitochondrion	29.13	64.53
TraesCS6A01G274900.1	Wheat	mitochondrion	61.68	62.33
Zm00001d004323_P001	Maize	mitochondrion	23.62	62.07
Zm00001d019818_P001	Maize	mitochondrion	23.1	60.69
Zm00001d033618_P001	Maize	cytosol	61.15	60.52
PGSC0003DMT400071027	Potato	cytosol	19.95	24.68
PGSC0003DMT400085920	Potato	mitochondrion	11.81	24.46
PGSC0003DMT400019586	Potato	extracellular	18.64	22.54
PGSC0003DMT400058518	Potato	cytosol	8.14	22.3
PGSC0003DMT400019584	Potato	cytosol	16.8	20.45
PGSC0003DMT400058520	Potato	cytosol	17.06	20.0
PGSC0003DMT400015828	Potato	cytosol	18.37	18.13
PGSC0003DMT400046698	Potato	plastid	22.57	14.33
PGSC0003DMT400059818	Potato	plastid	21.26	13.61
PGSC0003DMT400023675	Potato	plastid	19.95	11.91

Protein Annotations

KEGG:00630+1.17.1.9	KEGG:00680+1.17.1.9	Gene3D:3.40.50.720	MapMan:50.1.16	ProteinID:CAA79702	ProteinID:CAA79702.2
ProteinID:CAB17080	ProteinID:CAB17080.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
InterPro:FDH_NAD-dep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152
GO:GO:0008863	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0042183
GO:GO:0051287	GO:GO:0055114	UniProt:M0ZI98	HAMAP:MF_03210	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF02826	EnsemblPlantsGene:PGSC0003DMG400000496	PGSC:PGSC0003DMG400000496	EnsemblPlants:PGSC0003DMT400001303	ScanProsite:PS00065	ScanProsite:PS00670
ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	SUPFAM:SSF51735	SUPFAM:SSF52283	UniParc:UPI000295C179
EMBL:Z21493	EMBL:Z99991	EMBL:Z99992	SEG:seg	:	:

Description

Formate dehydrogenase, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400000496]

Coordinates

chr2:-:46987276..46991948

Molecular Weight (calculated)

42054.6 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.260

Length

381 amino acids

Sequence
(BLAST)

001: MAMSRVASTA ARAITSPSSL VFTRELQASP GPKKIVGVFY KANEYAEMNP NFLGCAENAL GIREWLESKG HQYIVTPDKE GPDCELEKHI PDLHVLISTP
101: FHPAYVTAER IKKAKNLQLL LTAGIGSDHV DLKAAAAAGL TVAEVTGSNT VSVAEDELMR ILILVRNFLP GHHQVINGEW NVAAIAHRAY DLEGKTVGTV
201: GAGRIGRLLL QRLKPFNCNL LYHDRLKMDS ELENQIGAKF EEDLDKMLSK CDIVVINTPL TEKTKGMFDK ERIAKLKKGV LIVNNARGAI METQAVVDAC
301: NSGHIAGYSG DVWYPQPAPK DHPWRYMPNQ AMTPHISGTT IDAQLRYAAG TKDMLDRYFK GEDFPAENYI VKDGELAPQY R

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.