Factsheet for TraesCS5D01G389600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G255200.2	Wheat	mitochondrion	75.75	73.74
TraesCS6B01G302400.2	Wheat	mitochondrion	74.93	72.94
EES07384	Sorghum	mitochondrion	71.66	68.49
TraesCS7D01G232300.1	Wheat	mitochondrion	68.39	66.58
Os06t0486900-01	Rice	mitochondrion	67.3	65.34
VIT_14s0066g01320.t01	Wine grape	mitochondrion	67.3	64.49
TraesCS4D01G007200.1	Wheat	golgi	65.67	64.27
KRG93315	Soybean	mitochondrion	65.12	63.73
Solyc02g086880.2.1	Tomato	plastid	65.94	63.52
PGSC0003DMT400001303	Potato	mitochondrion	65.67	63.25
GSMUA_Achr3P01200_001	Banana	mitochondrion	65.12	62.4
KRG93317	Soybean	nucleus	65.4	61.7
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	65.12	61.6
CDY09885	Canola	mitochondrion	63.49	60.84
Bra008737.1-P	Field mustard	mitochondrion	63.49	60.68
CDX69558	Canola	mitochondrion	63.49	60.68
AT5G14780.1	Thale cress	mitochondrion	63.22	60.42
CDX85582	Canola	mitochondrion	62.67	60.05
Bra023487.1-P	Field mustard	mitochondrion	62.4	59.64
CDX91020	Canola	mitochondrion	61.85	59.11
TraesCS6A01G274900.1	Wheat	mitochondrion	56.95	55.44
TraesCS2D01G030900.1	Wheat	cytosol	19.89	23.1
TraesCS2D01G034100.1	Wheat	mitochondrion	20.16	22.84
TraesCS2D01G034000.1	Wheat	cytosol, peroxisome, plastid	19.35	22.26
TraesCS2D01G034300.1	Wheat	plastid	20.98	21.27
TraesCS2D01G034700.1	Wheat	mitochondrion, plastid	19.07	20.96
TraesCS3D01G160800.1	Wheat	cytosol	17.98	20.75
TraesCS2D01G034600.1	Wheat	mitochondrion	18.26	20.3
TraesCS5D01G166200.2	Wheat	mitochondrion, plastid	17.17	16.67
TraesCS6D01G001700.1	Wheat	golgi, plastid	16.62	15.8
TraesCS7D01G483800.1	Wheat	plastid	20.98	12.62
TraesCS1D01G222600.2	Wheat	plastid	20.71	12.28
TraesCS3D01G160900.1	Wheat	cytosol	1.36	2.69

Protein Annotations

EnsemblPlants:TraesCS5D01G389600.1	EnsemblPlantsGene:TraesCS5D01G389600	Gene3D:3.40.50.720	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1
InterPro:D-isomer_DH_NAD-bd	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	PFAM:PF02826	ScanProsite:PS00065
ScanProsite:PS00670	SEG:seg	SUPFAM:SSF51735	SUPFAM:SSF52283	MapMan:50.1.16	:

Description

No Description!

Coordinates

chr5D:+:458776941..458778363

Molecular Weight (calculated)

39914.9 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.195

Length

367 amino acids

Sequence
(BLAST)

001: MGLIASLCFV LQGSKKIVGV LYKGGEHAAQ NPGFVGWVEN ALGIRGWLES LGHRYVVTDD KDGPDCGQFA LINNTHHFTS ITLTSVTLTD HACHPGRARA
101: ELEKHIGDAH VLVTTPFHPA YVGADRIGRA NNLELLLTAG IGSDHSDLPA PRSRAATPCR AVGGEWDLAA VAHRAYDLEG KTVGTVGAGR IGRLLLQRLK
201: PFGCTLLYHD RLRVDAALEE ELGAAFEEEV DAMLPKCDVV VLNIPLTDKT KGMFDKEKIA KMKRGVIIVN NALGAIMDTQ AVADACKSGH IAGYGGDVWY
301: PQPPPKDHPW RYMPNNAMTP HISGTTIDAQ LRYAAGVKDM LERYFKGQDF PEPNYIVKEG KLASQYQ

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.