Factsheet for TraesCS4B01G066400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G007200.1	Wheat	golgi	88.73	84.0
Zm00001d011368_P001	Maize	cytosol	68.17	83.74
Zm00001d011367_P001	Maize	cytosol	68.17	83.74
Zm00001d006877_P001	Maize	cytosol, mitochondrion, plastid	66.48	83.69
TraesCS7B01G130600.1	Wheat	mitochondrion	88.17	83.02
HORVU7Hr1G047700.3	Barley	mitochondrion, plasma membrane	87.61	82.49
EER89775	Sorghum	mitochondrion	85.63	80.85
Zm00001d014163_P001	Maize	mitochondrion	54.65	80.17
Zm00001d045965_P001	Maize	mitochondrion	84.79	80.05
Os06t0486800-01	Rice	mitochondrion	84.79	80.05
Zm00001d053924_P001	Maize	cytosol	50.7	76.27
VIT_14s0066g01320.t01	Wine grape	mitochondrion	80.0	74.15
KRG93315	Soybean	mitochondrion	77.18	73.07
GSMUA_Achr3P01200_001	Banana	mitochondrion	78.03	72.32
AT5G14780.1	Thale cress	mitochondrion	77.75	71.88
Solyc02g086880.2.1	Tomato	plastid	76.9	71.65
PGSC0003DMT400001303	Potato	mitochondrion	76.9	71.65
KRG93317	Soybean	nucleus	78.03	71.21
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	77.75	71.13
TraesCS6B01G302400.2	Wheat	mitochondrion	75.49	71.09
CDY09885	Canola	mitochondrion	76.06	70.5
Bra008737.1-P	Field mustard	mitochondrion	76.06	70.31
CDX69558	Canola	mitochondrion	76.06	70.31
Bra023487.1-P	Field mustard	mitochondrion	75.21	69.53
CDX85582	Canola	mitochondrion	74.93	69.45
CDX91020	Canola	mitochondrion	74.08	68.49
Zm00001d004323_P001	Maize	mitochondrion	26.76	65.52
Zm00001d019818_P001	Maize	mitochondrion	25.92	63.45
Zm00001d017801_P001	Maize	mitochondrion	29.01	59.88
Zm00001d033618_P001	Maize	cytosol	64.51	59.48
TraesCS2B01G048100.1	Wheat	plastid	21.97	22.67
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	19.72	22.15
TraesCS7B01G456600.1	Wheat	cytosol, plastid	21.41	22.09
TraesCS1B01G004500.1	Wheat	extracellular, golgi, mitochondrion	19.72	21.67
TraesCS2B01G048000.1	Wheat	mitochondrion	19.15	20.99
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	18.31	20.57
TraesCS2B01G048500.1	Wheat	cytosol	19.44	20.47
TraesCS7B01G373500.1	Wheat	cytosol	5.92	20.19
TraesCS5B01G226200.1	Wheat	cytosol	7.61	20.0
TraesCS4B01G324200.1	Wheat	peroxisome	17.75	19.94
TraesCS6B01G004400.1	Wheat	peroxisome	20.0	18.39
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	17.46	16.4
TraesCS7B01G400800.1	Wheat	plastid	21.97	12.77
TraesCS1B01G234300.2	Wheat	plastid	21.97	12.6

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.16	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826
ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF1	SUPFAM:SSF51735
SUPFAM:SSF52283	EnsemblPlantsGene:TraesCS4B01G066400	EnsemblPlants:TraesCS4B01G066400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:59231238..59234282

Molecular Weight (calculated)

39253.0 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.244

Length

355 amino acids

Sequence
(BLAST)

001: MFQSIVFVFR SSVLQTSAGG KKIVGVFYQA SEYADKNPNF VGCVEGALGI RSWLESNGHH YIVTDDKEGL DSELEKHIED MHVLITTPFH PAYVTAERIK
101: KAKNLELVLT AGIGSDHIDL LAAAAARLTG RADAHLDSAQ ELLPGYQQVV QGEWNVAGIA HRAYDLEGKT VGTVGAGRIG RLLLQRLKPF NCNLLYHDRI
201: QINPELEKEI GAIFEEDLDV MLPKCDVIVI NTPLTEKTRG MFNKEKIAKM KKGVIIVNNA RGAIMDTQAV ADACSSGYIA GYGGDVWFPQ PAPKDHPWRY
301: MPNHAMTPHT SGTTIDAQLR YASGVKDMLD RYFKGEDFPT ENYIVKEGEL AGQYK

Best Arabidopsis Sequence Match ( AT5G14780.1 )
(BLAST)

001: MAMRQAAKAT IRACSSSSSS GYFARRQFNA SSGDSKKIVG VFYKANEYAT KNPNFLGCVE NALGIRDWLE SQGHQYIVTD DKEGPDCELE KHIPDLHVLI
101: STPFHPAYVT AERIKKAKNL KLLLTAGIGS DHIDLQAAAA AGLTVAEVTG SNVVSVAEDE LMRILILMRN FVPGYNQVVK GEWNVAGIAY RAYDLEGKTI
201: GTVGAGRIGK LLLQRLKPFG CNLLYHDRLQ MAPELEKETG AKFVEDLNEM LPKCDVIVIN MPLTEKTRGM FNKELIGKLK KGVLIVNNAR GAIMERQAVV
301: DAVESGHIGG YSGDVWDPQP APKDHPWRYM PNQAMTPHTS GTTIDAQLRY AAGTKDMLER YFKGEDFPTE NYIVKDGELA PQYR

Arabidopsis Description

FDH1Formate dehydrogenase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UHK7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.