Factsheet for TraesCS1B01G004500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G226500.1	Wheat	extracellular, golgi, mitochondrion	100.0	100.0
TraesCS2B01G048000.1	Wheat	mitochondrion	76.78	76.54
Os04t0107300-01	Rice	mitochondrion, plasma membrane	65.94	65.34
Os11t0229100-01	Rice	extracellular	26.93	62.59
TraesCS2B01G048500.1	Wheat	cytosol	60.68	58.16
GSMUA_Achr4P17980_001	Banana	cytosol	19.2	57.94
TraesCS7B01G456600.1	Wheat	cytosol, plastid	61.3	57.56
TraesCS2B01G048100.1	Wheat	plastid	59.75	56.1
GSMUA_Achr5P14430_001	Banana	mitochondrion	51.08	54.28
GSMUA_Achr5P14420_001	Banana	cytosol	54.18	53.03
PGSC0003DMT400058518	Potato	cytosol	21.98	51.08
TraesCS2B01G047900.1	Wheat	cytosol, peroxisome, plastid	49.85	50.95
Solyc08g080030.2.1	Tomato	cytosol	41.18	49.26
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	43.34	48.28
CDY54697	Canola	mitochondrion	21.98	47.97
CDY57070	Canola	cytosol	46.75	46.89
TraesCS3B01G180100.1	Wheat	cytosol, golgi, unclear	45.82	46.84
TraesCS4B01G324200.1	Wheat	peroxisome	45.82	46.84
AT2G45630.2	Thale cress	plastid	48.61	46.45
Bra035498.1-P	Field mustard	cytosol	13.93	45.92
Bra026966.1-P	Field mustard	cytosol	33.75	45.61
PGSC0003DMT400058520	Potato	cytosol	45.82	45.54
CDY26572	Canola	cytosol	33.75	45.23
KRH48312	Soybean	cytosol	47.06	45.1
VIT_02s0025g04730.t01	Wine grape	cytosol	43.65	44.48
Bra019774.1-P	Field mustard	cytosol	47.37	44.35
CDX98054	Canola	cytosol	47.37	44.35
CDY17092	Canola	cytosol	14.55	44.34
CDY16011	Canola	cytosol, peroxisome, plastid	39.32	42.91
KRH48313	Soybean	cytosol	44.27	42.56
Solyc01g093990.2.1	Tomato	cytosol	42.41	42.41
CDY16012	Canola	cytosol, nucleus, peroxisome	30.34	40.66
KRH48311	Soybean	cytosol	41.8	40.42
CDY26571	Canola	plastid	36.84	40.2
KRH48310	Soybean	cytosol	41.18	39.82
KRH65201	Soybean	plastid	35.29	39.72
KRH65202	Soybean	cytosol	27.55	39.56
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	47.99	33.62
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	37.46	30.48
CDY16010	Canola	cytosol, nucleus, plastid	47.06	27.59
CDY26570	Canola	cytosol	34.37	24.67
TraesCS5B01G226200.1	Wheat	cytosol	10.22	24.44
TraesCS7B01G373500.1	Wheat	cytosol	7.12	22.12
TraesCS6B01G004400.1	Wheat	peroxisome	24.77	20.73
TraesCS4B01G066400.1	Wheat	mitochondrion	21.67	19.72
TraesCS5B01G158700.2	Wheat	mitochondrion, plastid	22.91	19.58
TraesCS7B01G130600.1	Wheat	mitochondrion	22.6	19.36
TraesCS6B01G302400.2	Wheat	mitochondrion	21.67	18.57
TraesCS7B01G400800.1	Wheat	plastid	29.41	15.55
TraesCS1B01G234300.2	Wheat	plastid	28.17	14.7

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016616
GO:GO:0051287	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	ScanProsite:PS00065
PANTHER:PTHR10996	PANTHER:PTHR10996:SF158	SUPFAM:SSF51735	SUPFAM:SSF52283	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1B01G004500
EnsemblPlants:TraesCS1B01G004500.1	TIGR:cd12156	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:2617772..2618743

Molecular Weight (calculated)

34551.4 Da

IEP (calculated)

5.909

GRAVY (calculated)

0.221

Length

323 amino acids

Sequence
(BLAST)

001: MTVSRRVLVL VRLSPASLAV LGARFHLLDL HASPLPMDAF LAAAAADNDD PPRAALIPGH GSVCVDAAFL DAVPSLRCVL FNSAGLDHVD LLECERRGVG
101: VANATGVYSA DVADYAVGLL IDVLPRVSAS DRHVRRGHWP ERGGHGFTLG RKRVGIIGLG SIGSAIATRL EAFNCAVSYH SRRQKSNVPY CYYPTARDLA
201: ECSDVLVVTC PLTAETRHIV DRRVLDALGS GGVVVNVARG ANVDEVELVR ALAEGRITGA GLDVFEHEPD VPPELLAMEN VVLTHHQAAF TPESVADLDR
301: LFVDNLEAFF RGSPLLTPVV VYD

Best Arabidopsis Sequence Match ( AT1G12550.1 )
(BLAST)

001: MAESSEPPVV LLHRPPSLTF MDEILTREFR TLITDTSSSE SLPSFFPRHA SSARAFVISG RLPVTDELLS HLPSLQILVC TSVGIDHIDL AACKRRGIVI
101: TNAGNAFSDD VADCAVGLLI SVLRRIPAAD RYVRSGNWAK FGDFQLGSKV SGKRVGIVGL GSIGSFVAKR LESFGCVISY NSRSQKQSSP YRYYSDILSL
201: AENNDVLVLC CSLTDETHHI VNREVMELLG KDGVVINVGR GKLIDEKEMV KCLVDGVIGG AGLDVFENEP AVPQELFGLD NVVLSPHFAV ATPGSLDNVA
301: QIALANLKAF FSNRPLLSPV QLD

Arabidopsis Description

HPR3Glyoxylate/hydroxypyruvate reductase HPR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.