Factsheet for Bra017637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72462	Canola	plastid	99.67	99.67
CDY49286	Canola	plastid	99.5	99.5
Bra034615.1-P	Field mustard	cytosol	27.42	95.91
Bra034616.1-P	Field mustard	plastid	94.15	93.68
AT4G34200.1	Thale cress	plastid	93.65	92.87
Bra011506.1-P	Field mustard	plastid	94.82	91.3
HORVU2Hr1G113180.3	Barley	cytosol	63.04	83.22
KRH35731	Soybean	nucleus	81.61	82.15
KRG91030	Soybean	endoplasmic reticulum	81.27	81.68
Solyc10g049890.1.1	Tomato	plastid	79.77	80.17
PGSC0003DMT400059818	Potato	plastid	79.77	80.17
Bra001747.1-P	Field mustard	plastid	76.59	78.02
GSMUA_Achr4P11440_001	Banana	plastid	71.24	74.87
Os04t0650800-01	Rice	plastid	76.59	74.71
Zm00001d026472_P001	Maize	plastid	75.92	74.18
EES12983	Sorghum	plastid	76.76	74.03
VIT_03s0180g00130.t01	Wine grape	cytosol	80.77	73.97
TraesCS2A01G508900.1	Wheat	plastid	75.92	73.7
GSMUA_Achr4P04100_001	Banana	plastid	71.4	73.62
Zm00001d002051_P001	Maize	plastid	76.25	72.84
Bra016589.1-P	Field mustard	plastid	71.24	68.6
Bra035498.1-P	Field mustard	cytosol	4.35	26.53
Bra035206.1-P	Field mustard	cytosol	13.71	26.45
Bra003888.1-P	Field mustard	mitochondrion	15.72	25.27
Bra004275.1-P	Field mustard	cytosol	16.22	25.13
Bra004055.1-P	Field mustard	cytosol	16.22	25.13
Bra003537.1-P	Field mustard	cytosol	12.71	24.28
Bra019774.1-P	Field mustard	cytosol	13.55	23.48
Bra023487.1-P	Field mustard	mitochondrion	15.05	23.44
Bra026966.1-P	Field mustard	cytosol	9.2	23.01
Bra008737.1-P	Field mustard	mitochondrion	14.38	22.4
Bra026967.1-P	Field mustard	cytosol, nucleus, plastid	12.21	18.39

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	EnsemblPlantsGene:Bra017637	EnsemblPlants:Bra017637.1
EnsemblPlants:Bra017637.1-P	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006564
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009555	GO:GO:0009561	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287
GO:GO:0055114	InterPro:IPR002912	InterPro:IPR029009	UniProt:M4DMA5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389
PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671
PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735
SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI00025411FC	SEG:seg	:

Description

AT4G34200 (E=2e-271) EDA9 | EDA9 (embryo sac development arrest 9); ATP binding

Coordinates

chrA03:-:29469432..29472023

Molecular Weight (calculated)

62811.1 Da

IEP (calculated)

6.883

GRAVY (calculated)

0.134

Length

598 amino acids

Sequence
(BLAST)

001: MSAAASSTIS VATTNPLKSL SLSSRSPLPS ASSISFPSRN PRRLVLVSCT TGDGSKPTIL VAEKLGDAGV KLLEDFANVD CSYNMTPEEL NTKISLCDAL
101: IVRSGTKVGR EVFESSRGRL KVVGRAGVGI DNVDLRAATE FGCLVVNAPT ANTIAAAEHG IALLAAMARN VAQADASVKA GEWKRNKYVG VSLVGKTLAV
201: LGFGKVGTEV ARRAKGLGMR VIAHDPYAPA DRAHAIGVEL VGFGEALATA DFISLHMPLT PATSKILNDE TFAKMKKGVR IVNVARGGVI DEDALVRALD
301: AGIVAQAALD VFTKEPPAKD SPLVQHERVT VTPHLGASTM EAQEGVAIEI AEAVVGALNG ELAATAVNAP MVSAEVLTEL KPYVVLAEKL GRLAVQLVAG
401: GSGVKNVKVS YTSARATDDL DTRLLRAMIT KGIIEPISDV YVNLVNADFT AKQRGLRLSE ERVVLDGSPE NPLETITVKL GNVESKFVSS LSESGEVKVE
501: GKVKDGVPHL TKVGSFEVDV PLEGSIILCR QVDQPGMIGT VGSILGESNV NVNFMSVGRI APRKQAIMAI GVDDQPSKET LKKIGEIPAV EEFVFLKL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.