CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 24385303
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44645	Soybean	nucleus	95.02	95.33
VIT_09s0018g01870.t01	Wine grape	plastid	77.85	77.72
Solyc03g123830.2.1	Tomato	plastid	75.92	75.44
KRH35731	Soybean	nucleus	71.75	75.25
CDX96754	Canola	plastid	74.8	75.04
PGSC0003DMT400023675	Potato	plastid	76.73	74.92
CDX83893	Canola	plastid	74.8	74.92
Bra016589.1-P	Field mustard	plastid	74.64	74.88
KRG91030	Soybean	endoplasmic reticulum	71.27	74.62
GSMUA_Achr10P...	Banana	plastid	73.52	74.35
GSMUA_Achr3P27990_001	Banana	plastid	72.55	73.5
GSMUA_Achr9P22790_001	Banana	plastid	60.67	72.0
KRH23702	Soybean	extracellular	67.58	71.84
AT1G17745.2	Thale cress	plastid	74.96	71.74
KRH47286	Soybean	nucleus	13.64	27.16
KRH36064	Soybean	nucleus	16.53	26.68
KRH65202	Soybean	cytosol	9.63	26.67
KRG90684	Soybean	nucleus	16.05	25.91
KRH48312	Soybean	cytosol	13.8	25.52
KRH44352	Soybean	peroxisome	6.26	25.49
KRH09880	Soybean	cytosol	12.04	24.75
KRG93315	Soybean	mitochondrion	13.96	23.2
KRH62463	Soybean	mitochondrion	14.13	22.51
KRH48310	Soybean	cytosol	12.04	22.46
KRH20294	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	13.96	22.42
KRG93317	Soybean	nucleus	13.64	21.85
KRH48313	Soybean	cytosol	11.56	21.43
KRH48311	Soybean	cytosol	11.4	21.26
KRH65201	Soybean	plastid	9.15	19.86

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	EntrezGene:100793819	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720
MapMan:4.1.4.1.1	InterPro:ACT_dom	EMBL:ACUP02004132	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS
InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd	EnsemblPlantsGene:GLYMA_07G003400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004617	GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
UniProt:I1KG47	InterPro:IPR002912	InterPro:IPR029009	EnsemblPlants:KRH47008	ProteinID:KRH47008	ProteinID:KRH47008.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842	PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065
ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548
SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI0001D83B62	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:263541..266168

Molecular Weight (calculated)

66223.0 Da

IEP (calculated)

7.783

GRAVY (calculated)

0.066

Length

623 amino acids

Sequence
(BLAST)

001: MASSACTKPI FPSAFTVSKS KLSRHVHVSF TSPKPIYYHY RKLSHASQRS LVVNSVLKTV DPTQTSLRRS NSEDVGSLGE KPTILVSEKL GEAGLQVLRG
101: VGHVECAYEL SQEELCTKIS CCDALIVRSG TKVTREVFEA GKGRLKVVGR AGVGIDNVDL QAATEFGCLV VNAPTANTIA AAEHGIALLA AMARNVAQAD
201: ASTKAGKWQR SKYVGVSMVG KTLAVMGFGK VGSEVARRAK GLGMHVIAHD PYAPADRARA IGVDLVSFDH AIATADFISL HMPLTPTTNK IFNDNTFAKM
301: KKGVRIVNVA RGGVIDEDAL VRALDTGIVA QAALDVFTEE PPSKDSKLVQ HENVTVTPHL GASTKEAQEG VAIEIAEAVL GALKGELSAT AVNAPMVAPE
401: VLSELAPYVV LAEKLGRLAV QLVCGGSGIK SVKIVYRSAR GPDDLDTRLL RAMVTKGLIE PISNTIVNLV NADFIAKQKG LRISEERVVV DSSPEMPVDS
501: IQVQISSVDS KFASAVSESG QISIDGRVKF GEPHLTCVGS FDVDVSLEGN LILCRQVDQP GMIGRVGNIL GEQNVNVSFM SVGRTSRRNK AIMAIGVDEE
601: PNKEALDNIG AVPAIEEFVF LKL

Best Arabidopsis Sequence Match ( AT1G17745.1 )
(BLAST)

001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL

Arabidopsis Description

PGDHD-3-phosphoglycerate dehydrogenase [Source:TAIR;Acc:AT1G17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.