Factsheet for GSMUA_Achr9P22790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27990_001	Banana	plastid	82.67	70.57
GSMUA_Achr10P...	Banana	plastid	81.33	69.32
GSMUA_Achr4P11440_001	Banana	plastid	67.81	62.57
GSMUA_Achr4P04100_001	Banana	plastid	68.76	62.24
VIT_09s0018g01870.t01	Wine grape	plastid	73.14	61.54
KRH47008	Soybean	endoplasmic reticulum	72.0	60.67
KRH44645	Soybean	nucleus	71.43	60.39
Solyc03g123830.2.1	Tomato	plastid	71.24	59.65
PGSC0003DMT400023675	Potato	plastid	72.38	59.56
CDX96754	Canola	plastid	68.38	57.81
CDX83893	Canola	plastid	68.38	57.72
Bra016589.1-P	Field mustard	plastid	68.19	57.65
AT1G17745.2	Thale cress	plastid	68.76	55.45
GSMUA_Achr4P17980_001	Banana	cytosol	6.67	32.71
GSMUA_Achr5P14420_001	Banana	cytosol	16.38	26.06
GSMUA_Achr3P31530_001	Banana	cytosol	15.62	25.95
GSMUA_Achr5P18940_001	Banana	cytosol	7.62	25.48
GSMUA_Achr5P14430_001	Banana	mitochondrion	14.67	25.33
GSMUA_Achr3P21910_001	Banana	cytosol	16.38	25.22
GSMUA_Achr3P03420_001	Banana	cytosol	14.86	24.68
GSMUA_Achr5P18950_001	Banana	cytosol	9.71	22.67
GSMUA_Achr3P01200_001	Banana	mitochondrion	15.43	21.15

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G22790_001	EnsemblPlants:GSMUA_Achr9P22790_001	EnsemblPlants:GSMUA_Achr9T22790_001
InterPro:IPR029009	UniProt:M0U2N8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF02826	InterPro:PGDH
ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SMART:SM00997
SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	TIGRFAMs:TIGR01327	UniParc:UPI00029575D9	SEG:seg

Description

D-3-phosphoglycerate dehydrogenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G22790_001]

Coordinates

chr9:-:27863060..27868929

Molecular Weight (calculated)

55525.1 Da

IEP (calculated)

7.700

GRAVY (calculated)

0.135

Length

525 amino acids

Sequence
(BLAST)

001: MASVTAAGKA LLHLSATTPD HHPLTSFSSP AVSFRSSRSR SPFLGLGLRL RLATSSEIPA LHARSAARGL RIEAAARPTI LVAEKLGEAG LALLREFANV
101: DCSYNLSPED LCSKISLCDA LIVRSGTKVT REVFDASKGR LKVVGRAGVG IDNVDLHAAT ESGCLVVNAP TANTVAAAEH GIALLASMAR NIAQADASMK
201: AGKWQRNKYV GVSLVGKTLA VMGFGKVGSE VARRAKGLGM HVIAHDPYAP ADRARAIGVE LVSFDEAIST ADFISLHMPM TTTTAKLFND EAFAKVKKGV
301: RIINVARGGV VDEDALVRAL DNGTVAQAAL DVFTVEPPPK DSKLVMHENV TVTPHLGAST VEAQEGVAVE IAEAVIGALK GELAATAVNA PMVPAEVLSE
401: LAPYVILAEK LGRLAVQLVA GGSGIKGVKV VYTSARDPDD LDTRILRAMI TKGIIEPISN VFVNIVNADY TAKQRGLRIS EERIYLDSSP EVPLDSIQVH
501: LTHVESKFAR CEHREVLAII DDNKQ

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.