Factsheet for GSMUA_Achr10P06200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27990_001	Banana	plastid	84.74	84.88
GSMUA_Achr9P22790_001	Banana	plastid	69.32	81.33
VIT_09s0018g01870.t01	Wine grape	plastid	76.46	75.48
GSMUA_Achr4P11440_001	Banana	plastid	69.64	75.4
KRH44645	Soybean	nucleus	74.19	73.59
KRH47008	Soybean	endoplasmic reticulum	74.35	73.52
Solyc03g123830.2.1	Tomato	plastid	74.35	73.05
PGSC0003DMT400023675	Potato	plastid	75.32	72.73
GSMUA_Achr4P04100_001	Banana	plastid	68.34	72.59
CDX83893	Canola	plastid	71.92	71.22
CDX96754	Canola	plastid	71.75	71.18
Bra016589.1-P	Field mustard	plastid	71.59	71.01
AT1G17745.2	Thale cress	plastid	71.92	68.05
GSMUA_Achr4P17980_001	Banana	cytosol	6.33	36.45
GSMUA_Achr5P18940_001	Banana	cytosol	7.47	29.3
GSMUA_Achr3P31530_001	Banana	cytosol	13.96	27.22
GSMUA_Achr5P14420_001	Banana	cytosol	14.45	26.97
GSMUA_Achr3P21910_001	Banana	cytosol	14.77	26.69
GSMUA_Achr5P14430_001	Banana	mitochondrion	12.82	25.99
GSMUA_Achr3P03420_001	Banana	cytosol	13.15	25.63
GSMUA_Achr5P18950_001	Banana	cytosol	7.95	21.78
GSMUA_Achr3P01200_001	Banana	mitochondrion	12.99	20.89

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00680+1.1.1.95	Gene3D:3.30.1330.90	Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1
InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617	GO:GO:0005488	GO:GO:0006564
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G06200_001	EnsemblPlants:GSMUA_Achr10P06200_001	EnsemblPlants:GSMUA_Achr10T06200_001
InterPro:IPR002912	InterPro:IPR029009	UniProt:M0RFU7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF14	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283	SUPFAM:SSF55021
TIGRFAMs:TIGR01327	UniParc:UPI000295402F	SEG:seg	:	:	:

Description

D-3-phosphoglycerate dehydrogenase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G06200_001]

Coordinates

chr10:-:16642547..16646414

Molecular Weight (calculated)

65035.8 Da

IEP (calculated)

6.656

GRAVY (calculated)

0.158

Length

616 amino acids

Sequence
(BLAST)

001: MASVAAKPLH LPAATTAELS SLAPYSTAAS VSFSSARSQS SFLGLRLALP LKTPCFRKRT EGRGLRIEAA AAARPTVLVA EKLGDAGLEL LRGFANVDCS
101: YNLAPEELCA KISLCDALIV RSGTKVTREV FEAAKGRLKV VGRAGVGIDN VDLQAATEHG CLVVNAPTAN TVAAAEHGIA LLASMARNVA QADASMKAGK
201: WQRNKYVGVS LVGKTLAVMG FGKVGSEVAR RAKGLGMHVI AHDPYAPADR ARAIGVELVS FDEAISAADF ISLHMPLTPS TAKLFNDETF AKVKKGVRII
301: NVARGGVIDE DALVRALDDG TVAQAALDVF TVEPPPKDSK LVMHEKVTVT PHLGASTVEA QEGVAIEIAE AVIGALKGEL AATAVNAPMV PAEVLSELAP
401: YVILAEKLGR LAVQLVAGGS GIKGVKVVYK SARDPDDLDT RILRAMITKG IIEPISSVFV NIVNADYTAK QRGLRISEER IFHDDTPEIP LDSIQVQLSN
501: VESKFASALS DAGDIRVEGR VKDGIPHLTL VGSFSVDVSL EGNLILCRQV DQPGMIGHVG RILGNQNVNI NFMSVGRTAP RKHAIMAIGV DEEPDKETLK
601: EIGEIPAIEE FVFLGL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.