Factsheet for VIT_18s0001g09890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G113180.3	Barley	cytosol	62.15	83.0
EES12983	Sorghum	plastid	78.51	76.61
VIT_03s0180g00130.t01	Wine grape	cytosol	82.64	76.57
Zm00001d026472_P001	Maize	plastid	77.19	76.31
Os04t0650800-01	Rice	plastid	77.19	76.18
GSMUA_Achr4P11440_001	Banana	plastid	71.57	76.1
Zm00001d002051_P001	Maize	plastid	77.85	75.24
TraesCS2A01G508900.1	Wheat	plastid	75.87	74.51
GSMUA_Achr4P04100_001	Banana	plastid	71.24	74.31
VIT_09s0018g01870.t01	Wine grape	plastid	74.55	72.28
VIT_09s0002g04300.t01	Wine grape	cytosol	14.55	28.11
VIT_02s0025g04750.t01	Wine grape	cytosol, plasma membrane	13.22	27.59
VIT_09s0002g04290.t01	Wine grape	cytosol, plastid	13.72	26.52
VIT_18s0041g01830.t01	Wine grape	cytosol	14.55	25.66
VIT_03s0038g02510.t01	Wine grape	cytosol, peroxisome, plastid	15.87	24.87
VIT_02s0025g04730.t01	Wine grape	cytosol	12.89	24.61
VIT_14s0066g01320.t01	Wine grape	mitochondrion	13.39	21.15
VIT_15s0048g01330.t01	Wine grape	mitochondrion, peroxisome, plastid	13.88	18.22

Protein Annotations

KEGG:00260+1.1.1.95	KEGG:00270+3.3.1.1	KEGG:00680+1.1.1.95	EntrezGene:100259056	wikigene:100259056	Gene3D:3.30.1330.90
Gene3D:3.30.70.260	Gene3D:3.40.50.720	MapMan:4.1.4.1.1	InterPro:ACT_dom	InterPro:ASB_dom_sf	InterPro:Ado_hCys_hydrolase_NAD-bd
ProteinID:CCB45803	ProteinID:CCB45803.1	InterPro:D-isomer_2_OHA_DH_cat_dom	InterPro:D-isomer_DH_CS	InterPro:D-isomer_DH_CS1	InterPro:D-isomer_DH_NAD-bd
UniProt:F6GZY2	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004617
GO:GO:0005488	GO:GO:0006564	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IPR002912
InterPro:IPR029009	EntrezGene:LOC100259056	wikigene:LOC100259056	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00389	PFAM:PF01842
PFAM:PF02826	InterPro:PGDH	ScanProsite:PS00065	ScanProsite:PS00670	ScanProsite:PS00671	PFscan:PS51671
PANTHER:PTHR42938	PANTHER:PTHR42938:SF6	SMART:SM00997	SUPFAM:SSF143548	SUPFAM:SSF51735	SUPFAM:SSF52283
SUPFAM:SSF55021	TIGRFAMs:TIGR01327	UniParc:UPI00019852FF	ArrayExpress:VIT_18s0001g09890	EnsemblPlantsGene:VIT_18s0001g09890	EnsemblPlants:VIT_18s0001g09890.t01
RefSeq:XP_002283022	RefSeq:XP_002283022.1	SEG:seg	:	:	:

Description

D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6GZY2]

Coordinates

chr18:+:8271939..8274895

Molecular Weight (calculated)

63802.2 Da

IEP (calculated)

6.801

GRAVY (calculated)

0.162

Length

605 amino acids

Sequence
(BLAST)

001: MAASCSTNLI SFPPSLRKST SPSYSLSWQA SLPSTVSFAV GRRVSSRTTK SLVVVVTAMM EAKPTVLVAE KLGEAGLELL KGFANVDCSY NMSPEELCTK
101: ISLCDALIVR SGTKVTREVF ESAGRRLKVV GRAGVGIDNV DLSAATEHGC LVVNAPTANT IAAAEHGVAL LTAMARNIAQ ADASVKAGKW ERSKYVGVSL
201: VGKTLAVMGF GKVGSEVARR AKGLGMHVIA HDPYAPADRA RAIGVNLVTF EEAISTADFI SLHMPLTPAT SKILNDESFS RMKKGVRIVN VARGGVIDEE
301: ALIRALDSGI VAQAALDVFT EEPPPKDSKL VQHENVTVTP HLGASTTEAQ EGVAIEIAEA VVGALKGELA ATAVNAPMVP AEVLSALAPF VVLAEKLGRL
401: AVQLVAGGSG VRSVKVTYAS SRGPDDLDTR LLRAMVTKGL IEPISSVFVN LVNADFTAKQ RGLRITEERV VLDGSPENPL EFIQVQIANV ESKFASAISE
501: SGEIKVEGRV KDGKPHLTKV GSFGVDVSLE GSLILLRHVD QPGIIGKVGS ILGEENVNVS FMSVGRTAPR KQAVMTIGVD EEPSREALTR IGNLPAIEEF
601: VFLEL

Best Arabidopsis Sequence Match ( AT4G34200.1 )
(BLAST)

001: MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS
101: LCDALIVRSG TKVGREVFES SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD ASVKAGEWKR NKYVGVSLVG
201: KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL
301: VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV
401: QLVAGGSGVK NAKITYASAR ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET ITVQLSNVES KFASSLSESG
501: EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF
601: LKL

Arabidopsis Description

PGDH1D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UWV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.