Factsheet for Solyc02g081150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22190.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT4G22190.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043110	Potato	nucleus	84.53	84.05
KRH51141	Soybean	nucleus	42.98	54.74
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	50.72	52.06
KRH11496	Soybean	plastid	47.28	45.96
GSMUA_Achr9P01390_001	Banana	nucleus	36.39	44.56
Bra019393.1-P	Field mustard	nucleus	40.69	44.38
CDX79134	Canola	nucleus, plastid	42.12	44.14
CDX82920	Canola	nucleus, plastid	42.12	43.88
Bra013598.1-P	Field mustard	nucleus, plastid	41.83	43.84
CDX98735	Canola	nucleus, plastid	38.11	41.69
GSMUA_Achr9P29340_001	Banana	nucleus	33.52	41.2
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	37.25	40.0
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	36.96	39.45
AT4G22190.1	Thale cress	plastid	42.69	38.5
EES08514	Sorghum	nucleus	36.39	37.57
Os11t0497350-00	Rice	mitochondrion, nucleus	33.81	37.46
TraesCS3B01G468300.1	Wheat	nucleus	32.09	29.87
TraesCS3D01G425600.1	Wheat	nucleus, plastid	30.37	27.32
TraesCS3A01G432400.1	Wheat	nucleus	30.09	27.27
HORVU3Hr1G094610.2	Barley	plastid	30.66	27.02
Os01t0922100-01	Rice	nucleus	32.09	26.79
EES04120	Sorghum	nucleus	30.66	26.16
Zm00001d042325_P001	Maize	nucleus	29.51	25.25
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	15.47	24.88
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	29.8	23.58
HORVU7Hr1G108760.1	Barley	plastid	12.32	23.24

Protein Annotations

EnsemblPlants:Solyc02g081150.1.1	EnsemblPlantsGene:Solyc02g081150.1	ncoils:Coil	PANTHER:PTHR35132	PANTHER:PTHR35132:SF1	SEG:seg
UniParc:UPI00027675C1	UniProt:K4B9Y5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2:-:45211846..45212895

Molecular Weight (calculated)

37509.8 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.807

Length

349 amino acids

Sequence
(BLAST)

001: MEDPERLTSS NSQTTTISSD SIHSPEFEFW MVRNPSFPQP NQLSADELFS HGVLLPLDLL QNETNVISPE PSGSGRPETE SGVEPSAAIV NSSGGGASFT
101: SSKRWKDIFK KTEKKDSNEE NCREKKKEKK KEKKLVGGSN GVTGAELNIN IWPFSRSRSA GNGGSRPRVT GGSGLATRKV SSAPCSRSNS AGESKSRKWP
201: SSPSRGGVHL GRSSPVWQVR RSSINPGSGT RSSDNLVKTT EKAIRKEAPQ KESSTRKVVT KKEGVEVRRK WSSAAAGGGP KTRVLNLNVP MCIGYRNQLG
301: CRSDQNSAIH IAAATGVGDD QNGSSTVTGE GVRGSNLFNL KSLFTKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.