Factsheet for VIT_10s0116g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51141	Soybean	nucleus	45.88	56.93
KRH11496	Soybean	plastid	55.59	52.65
Bra019393.1-P	Field mustard	nucleus	48.53	51.56
Solyc02g081150.1.1	Tomato	nucleus	52.06	50.72
PGSC0003DMT400043110	Potato	nucleus	51.76	50.14
CDX79134	Canola	nucleus, plastid	48.53	49.55
CDX82920	Canola	nucleus, plastid	48.53	49.25
Bra013598.1-P	Field mustard	nucleus, plastid	47.94	48.95
CDX98735	Canola	nucleus, plastid	45.88	48.9
GSMUA_Achr9P01390_001	Banana	nucleus	40.0	47.72
GSMUA_Achr9P29340_001	Banana	nucleus	38.82	46.48
AT4G22190.1	Thale cress	plastid	48.24	42.38
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	38.24	39.76
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	37.65	39.38
EES08514	Sorghum	nucleus	39.12	39.35
Os11t0497350-00	Rice	mitochondrion, nucleus	34.41	37.14
TraesCS3B01G468300.1	Wheat	nucleus	34.12	30.93
TraesCS3A01G432400.1	Wheat	nucleus	33.24	29.35
TraesCS3D01G425600.1	Wheat	nucleus, plastid	32.94	28.87
HORVU3Hr1G094610.2	Barley	plastid	33.53	28.79
HORVU7Hr1G108760.1	Barley	plastid	14.41	26.49
Zm00001d042325_P001	Maize	nucleus	31.76	26.47
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	16.76	26.27
Os01t0922100-01	Rice	nucleus	31.76	25.84
EES04120	Sorghum	nucleus	30.88	25.67
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	32.06	24.72

Protein Annotations

ArrayExpress:VIT_10s0116g00350	EMBL:FN596012	EnsemblPlants:VIT_10s0116g00350.t01	EnsemblPlantsGene:VIT_10s0116g00350	EntrezGene:100251709	EntrezGene:LOC100251709
PANTHER:PTHR35132	PANTHER:PTHR35132:SF1	ProteinID:CCB57255	ProteinID:CCB57255.1	RefSeq:XP_002270044	RefSeq:XP_002270044.1
SEG:seg	UniParc:UPI0001986088	UniProt:F6HRE7	wikigene:100251709	wikigene:LOC100251709	MapMan:35.2

Description

No Description!

Coordinates

chr10_random:-:157057..158315

Molecular Weight (calculated)

36269.4 Da

IEP (calculated)

10.849

GRAVY (calculated)

-0.886

Length

340 amino acids

Sequence
(BLAST)

001: MESPRFKLEP QTLSPSSSGR RSSDSNSPEF EFWMVRNPSF PQPNLLSADE LFVDGVLLPL HLLRHNPDSS KPVQELNSEA PDSEPPIPDT EPEPGPGPEI
101: SSAAPASTAS KRWKDIFKKG EKKSAKNGED KEKEKEKKKE RKSGSGASSA ELNINIWPFS RSRSAGNNAV RPRMAAGGAG TRKVSSAPCS RSNSAGESKS
201: RKWPSSPGRP GVHLGRSSPV WQVRRGGSAS KSLEPLVRNA EKGSKKEGSE NRRNRTPAPA PPAGIPKARV LNLNVPMCIG YRHHLSCRSD ENSTIGTSHT
301: IGSRGGGAGA SMGNGGGGSG NVGSASNLFN LRSLFTKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.