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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX79134 Canola nucleus, plastid 98.8 98.8
Bra019393.1-P Field mustard nucleus 66.37 69.06
AT4G22190.1 Thale cress plastid 74.17 63.82
KRH51141 Soybean nucleus 40.84 49.63
VIT_10s0116g00350.t01 Wine grape nucleus, plastid 48.95 47.94
KRH11496 Soybean plastid 45.95 42.62
GSMUA_Achr9P01390_001 Banana nucleus 36.34 42.46
Solyc02g081150.1.1 Tomato nucleus 43.84 41.83
GSMUA_Achr9P29340_001 Banana nucleus 35.44 41.55
PGSC0003DMT400043110 Potato nucleus 43.24 41.03
Zm00001d049162_P001 Maize cytosol, nucleus, peroxisome, plastid 37.54 38.23
EES08514 Sorghum nucleus 38.14 37.57
Zm00001d007331_P001 Maize cytosol, nucleus, peroxisome 36.04 36.92
Os11t0497350-00 Rice mitochondrion, nucleus 33.63 35.56
TraesCS3A01G432400.1 Wheat nucleus 33.63 29.09
TraesCS3B01G468300.1 Wheat nucleus 32.43 28.8
HORVU3Hr1G094610.2 Barley plastid 33.63 28.28
TraesCS3D01G425600.1 Wheat nucleus, plastid 32.13 27.58
HORVU7Hr1G108760.1 Barley plastid 15.32 27.57
HORVU1Hr1G084610.1 Barley cytosol, nucleus, plastid 17.72 27.19
Os01t0922100-01 Rice nucleus 33.03 26.32
Zm00001d042325_P001 Maize nucleus 31.53 25.74
EES04120 Sorghum nucleus 31.23 25.43
HORVU3Hr1G068710.2 Barley endoplasmic reticulum, vacuole 32.13 24.26
Protein Annotations
EnsemblPlants:Bra013598.1EnsemblPlants:Bra013598.1-PEnsemblPlantsGene:Bra013598PANTHER:PTHR35132SEG:segUniParc:UPI0002545552
UniProt:M4DAT8MapMan:35.2::::
Description
AT4G22190 (E=9e-137) | unknown protein
Coordinates
chrA01:-:6551855..6552856
Molecular Weight (calculated)
36408.5 Da
IEP (calculated)
10.528
GRAVY (calculated)
-0.962
Length
333 amino acids
Sequence
(BLAST)
001: MDSPTSIRGK PPPETLSPCG SQRRRSSCDS NSPEFEFWRL TNSSFLQTES DLLSADELFH DGVLLPLHLL SIKSEPQPDP NVSECEPDPS PSTDALITEQ
101: KTEPEPELGS ELTREPTVSK RWRDIFKKTE HKPVGKKEKV KDNKKKEKKS GSGQGSGSGS GAELNINIWP FSRSRSAGNN VTRPRMSFGA PTTRKVSSAP
201: CSRSNSTGES KSRKWPSSPG RNGVHLGRNS PVWQVRRGSG APTGKTISES VGRVSGKREV PEARRGKTGI ESNKAKVINL NVPMCIGYRS RLSCRNDQSG
301: SNNTGSDDNI ANVNNPNPNG LFGFRNLFVK KVH
Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.