Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98735 | Canola | nucleus, plastid | 79.38 | 79.62 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 69.06 | 66.37 |
| AT4G22190.1 | Thale cress | plastid | 66.56 | 55.04 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 51.56 | 48.53 |
| KRH51141 | Soybean | nucleus | 40.94 | 47.81 |
| KRH11496 | Soybean | plastid | 47.5 | 42.34 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 36.56 | 41.05 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 36.25 | 40.85 |
| Solyc02g081150.1.1 | Tomato | nucleus | 44.38 | 40.69 |
| PGSC0003DMT400043110 | Potato | nucleus | 43.44 | 39.6 |
| Zm00001d049162_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 38.75 | 37.92 |
| Zm00001d007331_P001 | Maize | cytosol, nucleus, peroxisome | 37.5 | 36.92 |
| EES08514 | Sorghum | nucleus | 37.5 | 35.5 |
| Os11t0497350-00 | Rice | mitochondrion, nucleus | 34.06 | 34.6 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 32.5 | 27.73 |
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 31.88 | 26.29 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 31.56 | 26.23 |
| HORVU3Hr1G094610.2 | Barley | plastid | 32.19 | 26.01 |
| Os01t0922100-01 | Rice | nucleus | 32.5 | 24.88 |
| Zm00001d042325_P001 | Maize | nucleus | 31.56 | 24.75 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 16.56 | 24.42 |
| HORVU7Hr1G108760.1 | Barley | plastid | 14.06 | 24.32 |
| EES04120 | Sorghum | nucleus | 30.31 | 23.72 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 30.94 | 22.45 |
Protein Annotations
Description
AT4G22190 (E=1e-114) | unknown protein
Coordinates
chrA03:-:24485116..24486078
Molecular Weight (calculated)
35071.1 Da
IEP (calculated)
10.661
GRAVY (calculated)
-0.830
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPTSIRSK TPPEILSSCG SQRHRSSCDS NSPEFEFWRL TNSSFHQQES YLLLSADELF HDGVLLPLHF LFVKPDPSAS ECAPEPSPSS DTLITEQKKE
101: PEPGLGSELT RETTGSKRWR DIFKKSENKP VRKKEKRKEN KKKSGSGSGS SSGAELNINI WPFSRSRSAG NNGTRPRMSF GAPTIRKVSS EPCSRSNSTG
201: ETKSRKCPSS PGRNGVHLGR NSPVWQVRRG SGAPTAKTVS ERVGKRVFSE ARRGKTGIES SKANVINLNV PMCIGYRSRL SCSSDVSGGD INIGSDNNIA
301: NVNNPNGLFG FRNLFIKKVH
101: PEPGLGSELT RETTGSKRWR DIFKKSENKP VRKKEKRKEN KKKSGSGSGS SSGAELNINI WPFSRSRSAG NNGTRPRMSF GAPTIRKVSS EPCSRSNSTG
201: ETKSRKCPSS PGRNGVHLGR NSPVWQVRRG SGAPTAKTVS ERVGKRVFSE ARRGKTGIES SKANVINLNV PMCIGYRSRL SCSSDVSGGD INIGSDNNIA
301: NVNNPNGLFG FRNLFIKKVH
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.