Factsheet for GSMUA_Achr9P01390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P29340_001	Banana	nucleus	64.21	64.44
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	48.77	42.51
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	48.07	42.15
KRH51141	Soybean	nucleus	39.65	41.24
EES08514	Sorghum	nucleus	48.77	41.12
Os11t0497350-00	Rice	mitochondrion, nucleus	44.56	40.32
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	47.72	40.0
CDX98735	Canola	nucleus, plastid	41.05	36.68
Bra019393.1-P	Field mustard	nucleus	41.05	36.56
CDX82920	Canola	nucleus, plastid	42.81	36.42
Solyc02g081150.1.1	Tomato	nucleus	44.56	36.39
Bra013598.1-P	Field mustard	nucleus, plastid	42.46	36.34
CDX79134	Canola	nucleus, plastid	42.46	36.34
PGSC0003DMT400043110	Potato	nucleus	44.56	36.18
KRH11496	Soybean	plastid	43.86	34.82
AT4G22190.1	Thale cress	plastid	43.16	31.78
TraesCS3B01G468300.1	Wheat	nucleus	37.54	28.53
TraesCS3A01G432400.1	Wheat	nucleus	36.84	27.27
HORVU3Hr1G094610.2	Barley	plastid	37.54	27.02
TraesCS3D01G425600.1	Wheat	nucleus, plastid	36.14	26.55
Zm00001d042325_P001	Maize	nucleus	37.54	26.23
EES04120	Sorghum	nucleus	37.19	25.92
HORVU7Hr1G108760.1	Barley	plastid	16.49	25.41
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	19.3	25.35
Os01t0922100-01	Rice	nucleus	34.74	23.68
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	35.79	23.13

Protein Annotations

EnsemblPlants:GSMUA_Achr9P01390_001	EnsemblPlants:GSMUA_Achr9T01390_001	EnsemblPlantsGene:GSMUA_Achr9G01390_001	PANTHER:PTHR35132	SEG:seg	UniParc:UPI0002969F08
UniProt:M0TWJ6	MapMan:35.2	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G01390_001]

Coordinates

chr9:+:1065056..1065913

Molecular Weight (calculated)

30156.4 Da

IEP (calculated)

11.279

GRAVY (calculated)

-0.772

Length

285 amino acids

Sequence
(BLAST)

001: MDGSTDGSPR RSSSASSSPE FEFWAVGKPP QQLLTADELF ADGVLLPLHL LSLRQPNRET DAPPGSQPEP EPAPDPSPPR PPPAADIAAS ISCSPASGSK
101: RWKDIFRVGE KKAAEEKERR KERKAGAGAA ELNINIWPFS RSRSAGSATA GGGRPRASVS GRRVSSAPCS RSNSRGESSK HPAAGGRRWA ASPGRPGGVP
201: VGRASPVWQI RRPELRDRDK VTGGKRASGP GLRVLNMNVN TCIGYRGQRS CRGDDKDGVT ARARTAGDGG GTLFSLKALF TKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.