CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79134	Canola	nucleus, plastid	98.21	98.8
CDX98735	Canola	nucleus, plastid	75.22	79.0
AT4G22190.1	Thale cress	plastid	74.93	64.86
KRH51141	Soybean	nucleus	40.6	49.63
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	49.25	48.53
KRH11496	Soybean	plastid	45.97	42.9
GSMUA_Achr9P01390_001	Banana	nucleus	36.42	42.81
Solyc02g081150.1.1	Tomato	nucleus	43.88	42.12
GSMUA_Achr9P29340_001	Banana	nucleus	35.52	41.9
PGSC0003DMT400043110	Potato	nucleus	43.28	41.31
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	37.61	38.53
EES08514	Sorghum	nucleus	38.21	37.87
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	36.72	37.85
Os11t0497350-00	Rice	mitochondrion, nucleus	33.73	35.87
TraesCS3A01G432400.1	Wheat	nucleus	33.73	29.35
TraesCS3B01G468300.1	Wheat	nucleus	32.54	29.07
HORVU3Hr1G094610.2	Barley	plastid	33.73	28.54
HORVU7Hr1G108760.1	Barley	plastid	15.52	28.11
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	17.91	27.65
TraesCS3D01G425600.1	Wheat	nucleus, plastid	31.94	27.58
Os01t0922100-01	Rice	nucleus	33.43	26.79
Zm00001d042325_P001	Maize	nucleus	31.34	25.74
EES04120	Sorghum	nucleus	30.45	24.94
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	32.24	24.49

Protein Annotations

EnsemblPlants:CDX82920	EnsemblPlantsGene:GSBRNA2T00138305001	PANTHER:PTHR35132	ProteinID:CDX82920	ProteinID:CDX82920.1	SEG:seg
UniParc:UPI0004EAD53D	MapMan:35.2	:	:	:	:

Description

BnaC01g13700D

Coordinates

chrLK031830:-:1339110..1340275

Molecular Weight (calculated)

36459.7 Da

IEP (calculated)

10.632

GRAVY (calculated)

-0.922

Length

335 amino acids

Sequence
(BLAST)

001: MDSPTSIRGK PPPETLSPCG SQRRRSSCDS NSPEFEFWRL TNSSFLQTES DLLSADELFH DGVLLPLHLL SIKSEPQPDP NVSECEPDPS PSTDALITEQ
101: KAEPEPGLGS ELTREPTVSK RWRDIFKKTE HKPVGKKEKV KDKKKKEKKS GSGPGSGSGS GSGAELNINI WPFSRSRSAG NNVTRPRMSF GAPTTRKVSS
201: APCSRSNSTG ESKSRKWPSS PGRNGVHLGR NSPVWQVRRG SGAPTGKTIS ESVGRVSGKR EVPEARRGKT GIESNKAKVI NLNVPMCIGY RSRLSCRNDQ
301: SGSNNIGSDD NIANVNNPNP NGLFGFRNLF IKKVH

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.