CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019393.1-P	Field mustard	nucleus	79.62	79.38
CDX82920	Canola	nucleus, plastid	79.0	75.22
CDX79134	Canola	nucleus, plastid	77.74	74.47
AT4G22190.1	Thale cress	plastid	68.65	56.59
KRH51141	Soybean	nucleus	39.5	45.99
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	48.9	45.88
GSMUA_Achr9P01390_001	Banana	nucleus	36.68	41.05
KRH11496	Soybean	plastid	45.14	40.11
GSMUA_Achr9P29340_001	Banana	nucleus	35.42	39.79
Solyc02g081150.1.1	Tomato	nucleus	41.69	38.11
PGSC0003DMT400043110	Potato	nucleus	41.07	37.32
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	37.93	37.0
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	36.99	36.31
EES08514	Sorghum	nucleus	38.24	36.09
Os11t0497350-00	Rice	mitochondrion, nucleus	34.17	34.6
TraesCS3A01G432400.1	Wheat	nucleus	32.29	26.75
TraesCS3B01G468300.1	Wheat	nucleus	31.03	26.4
TraesCS3D01G425600.1	Wheat	nucleus, plastid	31.66	26.03
HORVU3Hr1G094610.2	Barley	plastid	32.29	26.01
Zm00001d042325_P001	Maize	nucleus	32.6	25.49
HORVU7Hr1G108760.1	Barley	plastid	14.42	24.86
EES04120	Sorghum	nucleus	31.66	24.69
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	16.61	24.42
Os01t0922100-01	Rice	nucleus	31.35	23.92
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	30.72	22.22

Protein Annotations

EnsemblPlants:CDX98735	EnsemblPlantsGene:GSBRNA2T00106807001	PANTHER:PTHR35132	ProteinID:CDX98735	ProteinID:CDX98735.1	SEG:seg
UniParc:UPI0004EE72F2	MapMan:35.2	:	:	:	:

Description

BnaA03g45200D

Coordinates

chrLK031906:-:952865..953824

Molecular Weight (calculated)

34696.6 Da

IEP (calculated)

10.748

GRAVY (calculated)

-0.872

Length

319 amino acids

Sequence
(BLAST)

001: MDSPTSIRSK PPPEILSPCG SQRRRSSCDS NSPEFEFWRL ANSSFHQTES DLLSADELFH DGVLLPLHFL SVKPDPSASE CAPDPSPSSD TLITEQKKEP
101: EPGLGSELTR ETTGSKRWRD IFKKSENKPV RKKEKRKENK KKSGSGPGSS SGAELNINIW PFSRSRSAGN NGTGPRISFG APTTRKLSSA PCSRSNSTGE
201: TKSRKCPSSP GRNGVHLGRN SPVWQVRRGS GAPTAKTISE RVGKRVFSEA RRGKTGIESN KAKVINLNVP MCIGYRSRLS CSNDVSGGDS NIGSDNNIAN
301: VNNPNGLFGF RNLFIKKVH

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.