Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 78.4 | 75.77 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 72.8 | 70.91 |
| HORVU3Hr1G094610.2 | Barley | plastid | 74.13 | 70.2 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 71.47 | 60.77 |
| HORVU7Hr1G108760.1 | Barley | plastid | 25.33 | 51.35 |
| Os01t0922100-01 | Rice | nucleus | 56.8 | 50.96 |
| Zm00001d042325_P001 | Maize | nucleus | 52.8 | 48.53 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 27.73 | 47.93 |
| EES04120 | Sorghum | nucleus | 48.0 | 44.01 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 28.53 | 37.54 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 28.27 | 37.32 |
| KRH51141 | Soybean | nucleus | 26.67 | 36.5 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 30.93 | 34.12 |
| CDX79134 | Canola | nucleus, plastid | 29.07 | 32.73 |
| CDX82920 | Canola | nucleus, plastid | 29.07 | 32.54 |
| Bra019393.1-P | Field mustard | nucleus | 27.73 | 32.5 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 28.8 | 32.43 |
| Solyc02g081150.1.1 | Tomato | nucleus | 29.87 | 32.09 |
| PGSC0003DMT400043110 | Potato | nucleus | 29.87 | 31.91 |
| CDX98735 | Canola | nucleus, plastid | 26.4 | 31.03 |
| KRH11496 | Soybean | plastid | 28.27 | 29.53 |
| AT4G22190.1 | Thale cress | plastid | 27.2 | 26.36 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G468300.1 | EnsemblPlantsGene:TraesCS3B01G468300 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:-:712753839..712754966
Molecular Weight (calculated)
38122.0 Da
IEP (calculated)
5.520
GRAVY (calculated)
-0.403
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVVGLPSS PPESGCSSPS LTASPEFEFW MVGKNPGSFP SPALLTADEL FSDGIVLPLH TLQAPPACPD AEQDQGEEGE DTEADADPNK PPEEEGEPAT
101: QAQPLAEACA VPTPDLPAVT FKWKDIFKAT GESKERAKKA ERRVSSVSGN AELININIWP FSRSRSAGHS TSGASAGASS KAKATSPSTG NASAAVPSAP
201: AAPATAAGRK VSSAPCSRSN SRGEASGSGA PAVAIAAAAE KAAAQAPATS MLRRWVPGGQ SRAVLGTNGI RLGRASPVWQ LRRNKLQHQQ AAAEQKQSSK
301: NKAVPEGDAA TSQGQADAGE ADKATASAAD AAPATVSAPA AACRNNAACA EVAGEECVPP QGLFGLRTFF SKKVY
101: QAQPLAEACA VPTPDLPAVT FKWKDIFKAT GESKERAKKA ERRVSSVSGN AELININIWP FSRSRSAGHS TSGASAGASS KAKATSPSTG NASAAVPSAP
201: AAPATAAGRK VSSAPCSRSN SRGEASGSGA PAVAIAAAAE KAAAQAPATS MLRRWVPGGQ SRAVLGTNGI RLGRASPVWQ LRRNKLQHQQ AAAEQKQSSK
301: NKAVPEGDAA TSQGQADAGE ADKATASAAD AAPATVSAPA AACRNNAACA EVAGEECVPP QGLFGLRTFF SKKVY
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.