CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22190.1	KRH10294	AT3G46090.1	17259181
AT4G22190.1	KRH23029	AT3G46090.1	17259181
AT4G22190.1	KRH24840	AT3G46090.1	17259181
AT4G22190.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51141	Soybean	nucleus	43.73	57.3
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	52.65	55.59
Bra019393.1-P	Field mustard	nucleus	42.34	47.5
Solyc02g081150.1.1	Tomato	nucleus	45.96	47.28
PGSC0003DMT400043110	Potato	nucleus	45.68	46.72
CDX79134	Canola	nucleus, plastid	42.9	46.25
CDX82920	Canola	nucleus, plastid	42.9	45.97
Bra013598.1-P	Field mustard	nucleus, plastid	42.62	45.95
CDX98735	Canola	nucleus, plastid	40.11	45.14
GSMUA_Achr9P01390_001	Banana	nucleus	34.82	43.86
GSMUA_Achr9P29340_001	Banana	nucleus	33.98	42.96
AT4G22190.1	Thale cress	plastid	44.29	41.09
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	33.98	37.31
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	32.31	35.69
EES08514	Sorghum	nucleus	33.43	35.5
Os11t0497350-00	Rice	mitochondrion, nucleus	30.64	34.92
TraesCS3B01G468300.1	Wheat	nucleus	29.53	28.27
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	16.71	27.65
TraesCS3D01G425600.1	Wheat	nucleus, plastid	29.53	27.32
HORVU3Hr1G094610.2	Barley	plastid	29.53	26.77
TraesCS3A01G432400.1	Wheat	nucleus	28.69	26.75
HORVU7Hr1G108760.1	Barley	plastid	13.37	25.95
Zm00001d042325_P001	Maize	nucleus	28.13	24.75
Os01t0922100-01	Rice	nucleus	28.41	24.4
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	29.53	24.04
EES04120	Sorghum	nucleus	26.74	23.47

Protein Annotations

EMBL:ACUP02009212	EnsemblPlants:KRH11496	EnsemblPlantsGene:GLYMA_15G112200	ncoils:Coil	PANTHER:PTHR35132	PANTHER:PTHR35132:SF1
ProteinID:KRH11496	ProteinID:KRH11496.1	SEG:seg	UniParc:UPI00023D2BBD	UniProt:K7MAT8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr15:-:8811462..8812911

Molecular Weight (calculated)

38985.6 Da

IEP (calculated)

10.886

GRAVY (calculated)

-0.784

Length

359 amino acids

Sequence
(BLAST)

001: MAHGPSTSMD PSLKIKIYAI SFPSLMPLVG SFSLHALSFS HPPTATKRHK TTQHPSSHFI STMDSSPNRT SCCNSPEFEF WMLQNPSFPQ PNLLSADELF
101: VDGFLLPLHL LPNKPHPPQA SNFITPIHEP EPSPSITEST STTTFSSSKR WKDIFKKSDK KNAETNNNEE KEKAKKKERK SASGASSAEL NINIWPFSRS
201: RSAGNAGTRP KLFAGAPPTR KVNSAPCSRS NSAGESKSRK WPSSPGRAGV HVGRSSPVWQ VRRKNSNEPP QKPKARRSKV TAGGGTARVL NLNVPMCIGY
301: RHHLSCRSDE NSAAAVTNGN SNNNSTTNNN NSGGNDGGSG GNIFNLRNLF TKKCAVTSH

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.