Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049162_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 73.67 | 76.15 |
| Zm00001d007331_P001 | Maize | cytosol, nucleus, peroxisome | 69.82 | 72.62 |
| Os11t0497350-00 | Rice | mitochondrion, nucleus | 55.62 | 59.68 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 41.12 | 48.77 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 37.87 | 45.07 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 39.35 | 39.12 |
| CDX98735 | Canola | nucleus, plastid | 36.09 | 38.24 |
| CDX82920 | Canola | nucleus, plastid | 37.87 | 38.21 |
| CDX79134 | Canola | nucleus, plastid | 37.57 | 38.14 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 37.57 | 38.14 |
| KRH51141 | Soybean | nucleus | 30.77 | 37.96 |
| Bra019393.1-P | Field mustard | nucleus | 35.5 | 37.5 |
| Solyc02g081150.1.1 | Tomato | nucleus | 37.57 | 36.39 |
| PGSC0003DMT400043110 | Potato | nucleus | 36.39 | 35.04 |
| KRH11496 | Soybean | plastid | 35.5 | 33.43 |
| AT4G22190.1 | Thale cress | plastid | 37.28 | 32.56 |
| EES04120 | Sorghum | nucleus | 30.47 | 25.18 |
Protein Annotations
| EnsemblPlants:EES08514 | EnsemblPlantsGene:SORBI_3005G120800 | EntrezGene:8075820 | PANTHER:PTHR35132 | ProteinID:EES08514 | ProteinID:EES08514.1 |
| RefSeq:XP_002449526.1 | SEG:seg | UniParc:UPI0001A8636A | UniProt:C5Y2M9 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr5:+:52984764..52986442
Molecular Weight (calculated)
34381.3 Da
IEP (calculated)
11.293
GRAVY (calculated)
-0.647
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAEARRSS SASSSPEFEF WPLHPNPAAS PSCADELFAG GVILPLPVLP PKQASRKNRG SAISQGVPPV AEPEPEPELG EASLLATVAP PPTASITSPA
101: PPTASGGGGG GSKRWTDIFS KKPAPVAEEK DRDKEKEKRK DGTGSSRKQG GGHCGSGGAG SELNINIWPF SRSRSAGGGS GSGSSRPRQP ARKVSSAPCS
201: RSNSRGEAGG APPLRRWAAS PGRSGGGVPV GRSSPVWQIR RPAAKPAPAP VASASELFTD RRAPPPTQHK EKPAGAANNG RKPGLGGGVR GLNLSVNSCI
301: GYRHQVSCRR ADVGAARGSG SGSGGLFGIK GLFSKKVH
101: PPTASGGGGG GSKRWTDIFS KKPAPVAEEK DRDKEKEKRK DGTGSSRKQG GGHCGSGGAG SELNINIWPF SRSRSAGGGS GSGSSRPRQP ARKVSSAPCS
201: RSNSRGEAGG APPLRRWAAS PGRSGGGVPV GRSSPVWQIR RPAAKPAPAP VASASELFTD RRAPPPTQHK EKPAGAANNG RKPGLGGGVR GLNLSVNSCI
301: GYRHQVSCRR ADVGAARGSG SGSGGLFGIK GLFSKKVH
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.