Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G22190.1 | KRH10294 | AT3G46090.1 | 17259181 |
| AT4G22190.1 | KRH23029 | AT3G46090.1 | 17259181 |
| AT4G22190.1 | KRH24840 | AT3G46090.1 | 17259181 |
| AT4G22190.1 | KRH29844 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 56.93 | 45.88 |
| KRH11496 | Soybean | plastid | 57.3 | 43.73 |
| Solyc02g081150.1.1 | Tomato | nucleus | 54.74 | 42.98 |
| PGSC0003DMT400043110 | Potato | nucleus | 53.28 | 41.6 |
| CDX79134 | Canola | nucleus, plastid | 50.0 | 41.14 |
| Bra019393.1-P | Field mustard | nucleus | 47.81 | 40.94 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 49.63 | 40.84 |
| CDX82920 | Canola | nucleus, plastid | 49.63 | 40.6 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 41.24 | 39.65 |
| CDX98735 | Canola | nucleus, plastid | 45.99 | 39.5 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 37.96 | 36.62 |
| AT4G22190.1 | Thale cress | plastid | 48.91 | 34.63 |
| Zm00001d007331_P001 | Maize | cytosol, nucleus, peroxisome | 39.78 | 33.54 |
| Zm00001d049162_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 38.69 | 32.42 |
| Os11t0497350-00 | Rice | mitochondrion, nucleus | 36.5 | 31.75 |
| EES08514 | Sorghum | nucleus | 37.96 | 30.77 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 36.5 | 26.67 |
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 37.23 | 26.29 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 36.13 | 25.71 |
| HORVU3Hr1G094610.2 | Barley | plastid | 36.86 | 25.51 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 18.61 | 23.5 |
| Os01t0922100-01 | Rice | nucleus | 35.04 | 22.97 |
| Zm00001d042325_P001 | Maize | nucleus | 33.94 | 22.79 |
| HORVU7Hr1G108760.1 | Barley | plastid | 15.33 | 22.7 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 35.77 | 22.22 |
| EES04120 | Sorghum | nucleus | 31.75 | 21.27 |
Protein Annotations
| EMBL:ACUP02004729 | EnsemblPlants:KRH51141 | EnsemblPlantsGene:GLYMA_07G263700 | EntrezGene:102663000 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF1 |
| ProteinID:KRH51141 | ProteinID:KRH51141.1 | SEG:seg | UniParc:UPI00023C597B | UniProt:I1KNH3 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr7:-:43807840..43809529
Molecular Weight (calculated)
29785.3 Da
IEP (calculated)
11.340
GRAVY (calculated)
-0.729
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: METKSHSGSG ISPSASPEFE FWMVRNPSFP QPNILSADQL IVNGVLLPLH LLNKPDPSPA ITDSSSSSSS AATASKRWKD IFKKSDKKNT DAKKLKEKKS
101: GVTTSAELNI NIWPFSRSKS AGNAATRPKP FVPATRKANS APCSRSNSAG ESKSRKWPSS PARPGVHLGR SSPVWQVRRP KNPVPEPLNP DINKSKRESH
201: RSKVVGGSGS SKTKVLNLNV PMCIGYRHHF TCRSDENSAI RVSNPNPPHA HANVGGKLFT LRSLFTKKNV VTSH
101: GVTTSAELNI NIWPFSRSKS AGNAATRPKP FVPATRKANS APCSRSNSAG ESKSRKWPSS PARPGVHLGR SSPVWQVRRP KNPVPEPLNP DINKSKRESH
201: RSKVVGGSGS SKTKVLNLNV PMCIGYRHHF TCRSDENSAI RVSNPNPPHA HANVGGKLFT LRSLFTKKNV VTSH
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.