Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 77.14 | 76.55 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 70.91 | 72.8 |
| HORVU3Hr1G094610.2 | Barley | plastid | 72.73 | 70.71 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 75.06 | 65.53 |
| Os01t0922100-01 | Rice | nucleus | 55.58 | 51.2 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 27.27 | 48.39 |
| HORVU7Hr1G108760.1 | Barley | plastid | 22.08 | 45.95 |
| EES04120 | Sorghum | nucleus | 48.31 | 45.48 |
| Zm00001d042325_P001 | Maize | nucleus | 46.75 | 44.12 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 27.53 | 37.32 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 27.27 | 36.84 |
| KRH51141 | Soybean | nucleus | 25.71 | 36.13 |
| CDX79134 | Canola | nucleus, plastid | 29.35 | 33.93 |
| CDX82920 | Canola | nucleus, plastid | 29.35 | 33.73 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 29.09 | 33.63 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 29.35 | 33.24 |
| CDX98735 | Canola | nucleus, plastid | 26.75 | 32.29 |
| Bra019393.1-P | Field mustard | nucleus | 26.23 | 31.56 |
| PGSC0003DMT400043110 | Potato | nucleus | 27.53 | 30.2 |
| Solyc02g081150.1.1 | Tomato | nucleus | 27.27 | 30.09 |
| KRH11496 | Soybean | plastid | 26.75 | 28.69 |
| AT4G22190.1 | Thale cress | plastid | 28.05 | 27.91 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G432400.1 | EnsemblPlantsGene:TraesCS3A01G432400 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3A:-:673476271..673477809
Molecular Weight (calculated)
38925.7 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.386
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVVGLPSS PPESGRSSPS PTASPEFEFW MVGKNPGTFP SPALLTADEL FSDGIVLPLH TLQAPPPCPD AGQDDGEEDA EEDADPNVDV NDSSEPPEEE
101: GEPAAQPLAE ACAVPTLDLP AVTFKWKDIF KATGESKERA KKAERRVSGN AELININIWP FSRSRSAGHS TSGAGAGASS KAKASTPSTG NASAAAASAP
201: VAATATAAGR KVSSAPCSRS NSRGEASGSG VPAVAIAAAA EKAAAQAPAT SMLRRWVPGG QGRAGLSANG IRLGRASPVW QLRRNKLQQQ QQAAAEQKQS
301: SNATASGKNK AVPEDDAATS QVQADAGEAA DKATASAAAD AAPATVSAPA AACRNNAACA EVAGEECVPP QGLFGLGTFF SKKVY
101: GEPAAQPLAE ACAVPTLDLP AVTFKWKDIF KATGESKERA KKAERRVSGN AELININIWP FSRSRSAGHS TSGAGAGASS KAKASTPSTG NASAAAASAP
201: VAATATAAGR KVSSAPCSRS NSRGEASGSG VPAVAIAAAA EKAAAQAPAT SMLRRWVPGG QGRAGLSANG IRLGRASPVW QLRRNKLQQQ QQAAAEQKQS
301: SNATASGKNK AVPEDDAATS QVQADAGEAA DKATASAAAD AAPATVSAPA AACRNNAACA EVAGEECVPP QGLFGLGTFF SKKVY
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.