Factsheet for Zm00001d042325_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04120	Sorghum	nucleus	64.46	64.3
TraesCS3B01G468300.1	Wheat	nucleus	48.53	52.8
TraesCS3D01G425600.1	Wheat	nucleus, plastid	49.26	51.8
HORVU3Hr1G094610.2	Barley	plastid	47.79	49.24
TraesCS3A01G432400.1	Wheat	nucleus	44.12	46.75
Os01t0922100-01	Rice	nucleus	47.79	46.65
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	45.83	42.4
HORVU7Hr1G108760.1	Barley	plastid	17.89	39.46
GSMUA_Achr9P01390_001	Banana	nucleus	26.23	37.54
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	18.38	34.56
GSMUA_Achr9P29340_001	Banana	nucleus	24.02	34.51
KRH51141	Soybean	nucleus	22.79	33.94
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	26.23	32.72
CDX98735	Canola	nucleus, plastid	25.49	32.6
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	25.74	32.31
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	26.47	31.76
Bra019393.1-P	Field mustard	nucleus	24.75	31.56
CDX79134	Canola	nucleus, plastid	25.74	31.53
Bra013598.1-P	Field mustard	nucleus, plastid	25.74	31.53
CDX82920	Canola	nucleus, plastid	25.74	31.34
Solyc02g081150.1.1	Tomato	nucleus	25.25	29.51
PGSC0003DMT400043110	Potato	nucleus	24.26	28.21
KRH11496	Soybean	plastid	24.75	28.13
AT4G22190.1	Thale cress	plastid	23.28	24.55

Protein Annotations

EnsemblPlants:Zm00001d042325_P001	EnsemblPlants:Zm00001d042325_T001	EnsemblPlantsGene:Zm00001d042325	PANTHER:PTHR35132	PANTHER:PTHR35132:SF2	ProteinID:ONM35047.1
SEG:seg	UniParc:UPI00022187F8	UniProt:A0A1D6N2W4	MapMan:35.2	:	:

Description

Expressed protein; protein

Coordinates

chr3:+:161289071..161290297

Molecular Weight (calculated)

40940.4 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.431

Length

408 amino acids

Sequence
(BLAST)

001: MADAVGALPP PPLPPPPECE SGRSSPSHAA SPEFEFWMVG RNPSPALLTA DELFSGGVVL PLHTLQAPGA PDGDGAPQPQ ADADADADAA ALPLPDAQAQ
101: VEGEAAQPLA ESAIAPTPDL PAVTFKWKDI FKAGAGAGAE GKERKKVERR VSSVSGNAEL ININIWPFSR SRSAGAGAGT LSRAKPNPNP NPNPNPNAAV
201: AASGGASVNA NTTANATAPS APPAPAPVPR KVSSAPCSRS NSRGESSGPV PTIPTATATA APEAAAGEED ADAATQVQAA PLTAAGTSSA TSMLRRWVPG
301: QGRNNNNAAG PGGIRVGRPS AVWKLRRNKL QQTAAEQKQV GGKKKAAPAQ EPAAAADADA DAASDDKASP SVAAPAAGCR NNVEGAGEEG NPPQVLFGLR
401: TFFSKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.