Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- extracellular 1
- golgi 1
- plasma membrane 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G094610.2 | Barley | plastid | 79.59 | 88.64 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 65.53 | 75.06 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 60.77 | 71.47 |
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 62.59 | 71.13 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 31.97 | 64.98 |
| HORVU7Hr1G108760.1 | Barley | plastid | 25.62 | 61.08 |
| Os01t0922100-01 | Rice | nucleus | 52.38 | 55.26 |
| EES04120 | Sorghum | nucleus | 43.99 | 47.43 |
| Zm00001d042325_P001 | Maize | nucleus | 42.4 | 45.83 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 23.58 | 36.62 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 23.13 | 35.79 |
| KRH51141 | Soybean | nucleus | 22.22 | 35.77 |
| CDX79134 | Canola | nucleus, plastid | 24.49 | 32.43 |
| CDX82920 | Canola | nucleus, plastid | 24.49 | 32.24 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 24.26 | 32.13 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 24.72 | 32.06 |
| Bra019393.1-P | Field mustard | nucleus | 22.45 | 30.94 |
| CDX98735 | Canola | nucleus, plastid | 22.22 | 30.72 |
| Solyc02g081150.1.1 | Tomato | nucleus | 23.58 | 29.8 |
| PGSC0003DMT400043110 | Potato | nucleus | 23.58 | 29.63 |
| KRH11496 | Soybean | plastid | 24.04 | 29.53 |
| AT4G22190.1 | Thale cress | plastid | 23.36 | 26.61 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G068710.2 | EnsemblPlantsGene:HORVU3Hr1G068710 | ncoils:Coil | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF2 | SEG:seg |
| UniParc:UPI000B4875FD | UniProt:A0A287LHX1 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:520588723..520590259
Molecular Weight (calculated)
44954.3 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.284
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: PLLLASHAAP TPSHAVAVLH IASYLACLLV LHVPSQPRPC CIARRAMDVV VVGLASPPPE SGRSSPSPTA SPEFEFWMVG KNPGSFPSPA LLTADQLFSD
101: GIVLPLHTLQ APPAGPDADQ HQGQDQAAVE DADQDQDADV NEPSDPPEQE GEAAEQVQPL AEACAVPTPD LPAVTFKWKD IFKATGESKE RAKKAERRVS
201: SVSGNAELIN INIWPFSRSR SAGHSTSGAG AGASSKAKAT NPSNGNASAA AASAPSAAAP ATAAGRKVSS APCSRSNSRG ETSGTVAPAV AIAAAAEKAA
301: AQAPATSMLR RWVPGGQGRA GLSANGIRLG RASPVWQLRR NKLQQQQQAA AEQKQNINAT ATATASGKNK AVAEVDAATS QGQADAGKED AAATSGEAPA
401: TVSAPAAACR NNAVCAEVAG EECVPPQGLF GLRTFFSKKV Y
101: GIVLPLHTLQ APPAGPDADQ HQGQDQAAVE DADQDQDADV NEPSDPPEQE GEAAEQVQPL AEACAVPTPD LPAVTFKWKD IFKATGESKE RAKKAERRVS
201: SVSGNAELIN INIWPFSRSR SAGHSTSGAG AGASSKAKAT NPSNGNASAA AASAPSAAAP ATAAGRKVSS APCSRSNSRG ETSGTVAPAV AIAAAAEKAA
301: AQAPATSMLR RWVPGGQGRA GLSANGIRLG RASPVWQLRR NKLQQQQQAA AEQKQNINAT ATATASGKNK AVAEVDAATS QGQADAGKED AAATSGEAPA
401: TVSAPAAACR NNAVCAEVAG EECVPPQGLF GLRTFFSKKV Y
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.