Factsheet for HORVU3Hr1G094610.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	88.64	79.59
TraesCS3B01G468300.1	Wheat	nucleus	70.2	74.13
TraesCS3D01G425600.1	Wheat	nucleus, plastid	72.47	73.97
TraesCS3A01G432400.1	Wheat	nucleus	70.71	72.73
HORVU7Hr1G108760.1	Barley	plastid	31.57	67.57
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	32.07	58.53
Os01t0922100-01	Rice	nucleus	56.06	53.11
Zm00001d042325_P001	Maize	nucleus	49.24	47.79
EES04120	Sorghum	nucleus	46.72	45.23
GSMUA_Achr9P01390_001	Banana	nucleus	27.02	37.54
GSMUA_Achr9P29340_001	Banana	nucleus	26.77	37.32
KRH51141	Soybean	nucleus	25.51	36.86
CDX79134	Canola	nucleus, plastid	28.54	33.93
CDX82920	Canola	nucleus, plastid	28.54	33.73
Bra013598.1-P	Field mustard	nucleus, plastid	28.28	33.63
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	28.79	33.53
CDX98735	Canola	nucleus, plastid	26.01	32.29
Bra019393.1-P	Field mustard	nucleus	26.01	32.19
Solyc02g081150.1.1	Tomato	nucleus	27.02	30.66
PGSC0003DMT400043110	Potato	nucleus	26.77	30.2
KRH11496	Soybean	plastid	26.77	29.53
AT4G22190.1	Thale cress	plastid	26.26	26.87

Protein Annotations

EnsemblPlants:HORVU3Hr1G094610.2	EnsemblPlantsGene:HORVU3Hr1G094610	ncoils:Coil	PANTHER:PTHR35132	PANTHER:PTHR35132:SF2	SEG:seg
UniParc:UPI000B463754	UniProt:A0A287MD44	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:646922689..646923879

Molecular Weight (calculated)

40207.3 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.401

Length

396 amino acids

Sequence
(BLAST)

001: AMDVVVVGLA SPPPESGRSS PSPTASPEFE FWMVGKNPGS FPSPALLTAD QLFSDGIVLP LHTLQAPPAG PDADQHQGQD QAAVEDADQD QDADVNEPSD
101: PPEQEGEAAE QVQPLAEACA VPTPDLPAVT FKWKDIFKAT GESKERAKKA ERRVSSVSGN AELININIWP FSRSRSAGHS TSGAGAGASS KAKATNPSNG
201: NASAAAASAP SAAAPATAAG RKVSSAPCSR SNSRGETSGT VAPAVAIAAA AEKAAAQAPA TSMLRRWVPG GQGRAGLSAN GIRLGRASPV WQLRRNKLQQ
301: QQQAAAEQKQ NINATATATA SGKNKAVAEV DAATSQGQAD AGKEDAAATS GEAPATVSAP AAACRNNAVC AEVAGEECVP PQGLFGLRTF FSKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.