Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 3
- extracellular 2
- golgi 2
- plasma membrane 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82920 | Canola | nucleus, plastid | 64.86 | 74.93 |
| CDX79134 | Canola | nucleus, plastid | 64.34 | 74.77 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 63.82 | 74.17 |
| CDX98735 | Canola | nucleus, plastid | 56.59 | 68.65 |
| Bra019393.1-P | Field mustard | nucleus | 55.04 | 66.56 |
| KRH51141 | Soybean | nucleus | 34.63 | 48.91 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 42.38 | 48.24 |
| KRH11496 | Soybean | plastid | 41.09 | 44.29 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 31.78 | 43.16 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 31.52 | 42.96 |
| Solyc02g081150.1.1 | Tomato | nucleus | 38.5 | 42.69 |
| PGSC0003DMT400043110 | Potato | nucleus | 37.98 | 41.88 |
| Zm00001d049162_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 32.82 | 38.84 |
| Zm00001d007331_P001 | Maize | cytosol, nucleus, peroxisome | 32.04 | 38.15 |
| EES08514 | Sorghum | nucleus | 32.56 | 37.28 |
| Os11t0497350-00 | Rice | mitochondrion, nucleus | 27.91 | 34.29 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 27.91 | 28.05 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 26.36 | 27.2 |
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 27.13 | 27.06 |
| Os01t0922100-01 | Rice | nucleus | 28.42 | 26.32 |
| HORVU3Hr1G094610.2 | Barley | plastid | 26.87 | 26.26 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 14.47 | 25.81 |
| HORVU7Hr1G108760.1 | Barley | plastid | 12.14 | 25.41 |
| EES04120 | Sorghum | nucleus | 25.84 | 24.45 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 26.61 | 23.36 |
| Zm00001d042325_P001 | Maize | nucleus | 24.55 | 23.28 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828310 | ProteinID:AEE84570.1 | ArrayExpress:AT4G22190 | EnsemblPlantsGene:AT4G22190 | RefSeq:AT4G22190 |
| TAIR:AT4G22190 | RefSeq:AT4G22190-TAIR-G | EnsemblPlants:AT4G22190.1 | TAIR:AT4G22190.1 | EMBL:AY099607 | EMBL:AY128854 |
| Unigene:At.1969 | RefSeq:NP_567650.2 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF1 | UniProt:Q8L4C5 | UniParc:UPI00000A6EBD |
| SEG:seg | : | : | : | : | : |
Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
Coordinates
chr4:-:11741780..11743318
Molecular Weight (calculated)
42334.9 Da
IEP (calculated)
10.329
GRAVY (calculated)
-0.719
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.