Factsheet for GSMUA_Achr9P29340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P01390_001	Banana	nucleus	64.44	64.21
Zm00001d049162_P001	Maize	cytosol, nucleus, peroxisome, plastid	45.42	39.45
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	46.48	38.82
Zm00001d007331_P001	Maize	cytosol, nucleus, peroxisome	43.66	38.15
KRH51141	Soybean	nucleus	36.62	37.96
EES08514	Sorghum	nucleus	45.07	37.87
Os11t0497350-00	Rice	mitochondrion, nucleus	41.55	37.46
Bra019393.1-P	Field mustard	nucleus	40.85	36.25
CDX82920	Canola	nucleus, plastid	41.9	35.52
Bra013598.1-P	Field mustard	nucleus, plastid	41.55	35.44
CDX79134	Canola	nucleus, plastid	41.55	35.44
CDX98735	Canola	nucleus, plastid	39.79	35.42
PGSC0003DMT400043110	Potato	nucleus	42.61	34.47
KRH11496	Soybean	plastid	42.96	33.98
Solyc02g081150.1.1	Tomato	nucleus	41.2	33.52
AT4G22190.1	Thale cress	plastid	42.96	31.52
TraesCS3B01G468300.1	Wheat	nucleus	37.32	28.27
TraesCS3A01G432400.1	Wheat	nucleus	37.32	27.53
HORVU3Hr1G094610.2	Barley	plastid	37.32	26.77
TraesCS3D01G425600.1	Wheat	nucleus, plastid	36.27	26.55
EES04120	Sorghum	nucleus	36.97	25.67
HORVU7Hr1G108760.1	Barley	plastid	15.85	24.32
Zm00001d042325_P001	Maize	nucleus	34.51	24.02
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	18.31	23.96
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	36.62	23.58
Os01t0922100-01	Rice	nucleus	34.51	23.45

Protein Annotations

EnsemblPlants:GSMUA_Achr9P29340_001	EnsemblPlants:GSMUA_Achr9T29340_001	EnsemblPlantsGene:GSMUA_Achr9G29340_001	PANTHER:PTHR35132	SEG:seg	UniParc:UPI0002950AD6
UniProt:M0U4J1	MapMan:35.2	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G29340_001]

Coordinates

chr9:+:33061709..33062563

Molecular Weight (calculated)

29758.8 Da

IEP (calculated)

11.014

GRAVY (calculated)

-0.624

Length

284 amino acids

Sequence
(BLAST)

001: MEGSPRRRSS ASSSPEFEFL AISNSPAQLL SADELFADGV LLPLHLLSLR QPHPGRETGT GTEPEPEPDP DPSLPPPPPP PSPTDDITAS ISCSPTSGSK
101: RWKDIFRVGE KKAAEAKERK GSSGGAAEPS ISLWPFSRSR SAGNPAAGGG RPRATAYGRK VSSTPCSRSN SSGEYSAWPA PAAGGRRWAA SPGRAGGVPV
201: GRTSPVWQIR RPEHRDKITG SKTGSVGAGI RVLNLNVNTL VGFRRGEGSC RGDDKVGLTA RARTAGHSGG SLFSLRALFS KKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.