CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042325_P001	Maize	nucleus	64.3	64.46
Os01t0922100-01	Rice	nucleus	50.12	49.04
TraesCS3A01G432400.1	Wheat	nucleus	45.48	48.31
TraesCS3D01G425600.1	Wheat	nucleus, plastid	45.72	48.2
TraesCS3B01G468300.1	Wheat	nucleus	44.01	48.0
HORVU3Hr1G094610.2	Barley	plastid	45.23	46.72
HORVU3Hr1G068710.2	Barley	endoplasmic reticulum, vacuole	47.43	43.99
HORVU1Hr1G084610.1	Barley	cytosol, nucleus, plastid	20.29	38.25
GSMUA_Achr9P01390_001	Banana	nucleus	25.92	37.19
GSMUA_Achr9P29340_001	Banana	nucleus	25.67	36.97
HORVU7Hr1G108760.1	Barley	plastid	14.91	32.97
KRH51141	Soybean	nucleus	21.27	31.75
CDX98735	Canola	nucleus, plastid	24.69	31.66
CDX79134	Canola	nucleus, plastid	25.43	31.23
Bra013598.1-P	Field mustard	nucleus, plastid	25.43	31.23
VIT_10s0116g00350.t01	Wine grape	nucleus, plastid	25.67	30.88
Solyc02g081150.1.1	Tomato	nucleus	26.16	30.66
EES08514	Sorghum	nucleus	25.18	30.47
CDX82920	Canola	nucleus, plastid	24.94	30.45
Bra019393.1-P	Field mustard	nucleus	23.72	30.31
PGSC0003DMT400043110	Potato	nucleus	25.18	29.34
KRH11496	Soybean	plastid	23.47	26.74
AT4G22190.1	Thale cress	plastid	24.45	25.84

Protein Annotations

EnsemblPlants:EES04120	EnsemblPlantsGene:SORBI_3003G406500	EntrezGene:8059371	PANTHER:PTHR35132	PANTHER:PTHR35132:SF2	ProteinID:EES04120
ProteinID:EES04120.1	RefSeq:XP_002459000.1	SEG:seg	UniParc:UPI0001A855BB	UniProt:C5XGB8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr3:-:71370219..71371448

Molecular Weight (calculated)

40697.0 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.429

Length

409 amino acids

Sequence
(BLAST)

001: MADTVGALPP SPIPECDSGR SSPSHAASPE FEFWLVGTNP SPALLTADEL FSGGVVLPLH NLQAPAATDG DGAPAPQADA DDAAAKADLK GADAAALPLP
101: EAQAQEAEGE TAQPLAESGI APTPDLPAVT FKWKDIFKAG GAAGGEAKER KKVERRVSSV SGNAELININ IWPFSRSRSA GAGGGSLSRA KPNPNPNPIP
201: NAAGASPSAG AGASANTNAN ASAPSAPPAP RKVSSAPCSR SNSRGESSGP VPTIPATTAV EAPAGEEDAD AATQPQPQAA PLPAAAGTSS ATSMLRRWVP
301: GQGRNNNNGA GSGSGGIRVG RPSAVWQLRR NKLQQTAAEQ KQVSAKKKAA AGPAPVSAPA AAGANDDKAA PSVAAPAAGC RNNVEGAGEE GNPPQGLFGL
401: RTFFSKKVY

Best Arabidopsis Sequence Match ( AT4G22190.1 )
(BLAST)

001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY

Arabidopsis Description

Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.