Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G468300.1 | Wheat | nucleus | 75.77 | 78.4 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 76.55 | 77.14 |
| HORVU3Hr1G094610.2 | Barley | plastid | 73.97 | 72.47 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 71.13 | 62.59 |
| Os01t0922100-01 | Rice | nucleus | 54.12 | 50.24 |
| HORVU7Hr1G108760.1 | Barley | plastid | 23.71 | 49.73 |
| Zm00001d042325_P001 | Maize | nucleus | 51.8 | 49.26 |
| EES04120 | Sorghum | nucleus | 48.2 | 45.72 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 24.48 | 43.78 |
| KRH51141 | Soybean | nucleus | 26.29 | 37.23 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 26.55 | 36.27 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 26.55 | 36.14 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 28.87 | 32.94 |
| CDX79134 | Canola | nucleus, plastid | 27.84 | 32.43 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 27.58 | 32.13 |
| CDX82920 | Canola | nucleus, plastid | 27.58 | 31.94 |
| Bra019393.1-P | Field mustard | nucleus | 26.29 | 31.88 |
| CDX98735 | Canola | nucleus, plastid | 26.03 | 31.66 |
| Solyc02g081150.1.1 | Tomato | nucleus | 27.32 | 30.37 |
| PGSC0003DMT400043110 | Potato | nucleus | 27.06 | 29.91 |
| KRH11496 | Soybean | plastid | 27.32 | 29.53 |
| AT4G22190.1 | Thale cress | plastid | 27.06 | 27.13 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G425600.1 | EnsemblPlantsGene:TraesCS3D01G425600 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF2 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3D:-:537939919..537941342
Molecular Weight (calculated)
39113.8 Da
IEP (calculated)
4.901
GRAVY (calculated)
-0.423
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVVGLPSS PPDSGRSSPS PTASPEFEFW MVGKNPGSFP SPALLTADEL FSGGIVLPLH TLQAPPACPD ADQDQDAGED AEADADADDV NESAEPPEEE
101: GEPATQAQPL AEACAVPTPD LPAVTFKWKD IFKATGESKE RAKKAERRVS SVSGNAELIN INIWPFSRSR SAGHSTSGAG AGASSKAKAT SPSTGNASAA
201: AASAPAAPTA TAAGRKVSSA PCSRSNSRGE ASGSGVPAVA IAAAAEKAAA QAPATSMLRR WVPGGQGRAG LSANGIRLGR ASPVWQLRRN KLQQQQAAAE
301: QKQSSNATAT ASGKSKAVPE QDDAATSQGQ ADGGEADKAT ASAAADAAPA TVSAPAAACR NNAEVAGEEC VPPQGLFGLR TFFSKKVY
101: GEPATQAQPL AEACAVPTPD LPAVTFKWKD IFKATGESKE RAKKAERRVS SVSGNAELIN INIWPFSRSR SAGHSTSGAG AGASSKAKAT SPSTGNASAA
201: AASAPAAPTA TAAGRKVSSA PCSRSNSRGE ASGSGVPAVA IAAAAEKAAA QAPATSMLRR WVPGGQGRAG LSANGIRLGR ASPVWQLRRN KLQQQQAAAE
301: QKQSSNATAT ASGKSKAVPE QDDAATSQGQ ADGGEADKAT ASAAADAAPA TVSAPAAACR NNAEVAGEEC VPPQGLFGLR TFFSKKVY
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.