Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g081150.1.1 | Tomato | nucleus | 84.05 | 84.53 |
| KRH51141 | Soybean | nucleus | 41.6 | 53.28 |
| VIT_10s0116g00350.t01 | Wine grape | nucleus, plastid | 50.14 | 51.76 |
| KRH11496 | Soybean | plastid | 46.72 | 45.68 |
| GSMUA_Achr9P01390_001 | Banana | nucleus | 36.18 | 44.56 |
| CDX79134 | Canola | nucleus, plastid | 41.31 | 43.54 |
| Bra019393.1-P | Field mustard | nucleus | 39.6 | 43.44 |
| CDX82920 | Canola | nucleus, plastid | 41.31 | 43.28 |
| Bra013598.1-P | Field mustard | nucleus, plastid | 41.03 | 43.24 |
| GSMUA_Achr9P29340_001 | Banana | nucleus | 34.47 | 42.61 |
| CDX98735 | Canola | nucleus, plastid | 37.32 | 41.07 |
| Zm00001d007331_P001 | Maize | cytosol, nucleus, peroxisome | 37.61 | 40.62 |
| Os11t0497350-00 | Rice | mitochondrion, nucleus | 34.76 | 38.73 |
| Zm00001d049162_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 35.9 | 38.53 |
| AT4G22190.1 | Thale cress | plastid | 41.88 | 37.98 |
| EES08514 | Sorghum | nucleus | 35.04 | 36.39 |
| TraesCS3B01G468300.1 | Wheat | nucleus | 31.91 | 29.87 |
| TraesCS3A01G432400.1 | Wheat | nucleus | 30.2 | 27.53 |
| TraesCS3D01G425600.1 | Wheat | nucleus, plastid | 29.91 | 27.06 |
| Os01t0922100-01 | Rice | nucleus | 32.19 | 27.03 |
| HORVU3Hr1G094610.2 | Barley | plastid | 30.2 | 26.77 |
| HORVU1Hr1G084610.1 | Barley | cytosol, nucleus, plastid | 15.67 | 25.35 |
| EES04120 | Sorghum | nucleus | 29.34 | 25.18 |
| HORVU7Hr1G108760.1 | Barley | plastid | 12.82 | 24.32 |
| Zm00001d042325_P001 | Maize | nucleus | 28.21 | 24.26 |
| HORVU3Hr1G068710.2 | Barley | endoplasmic reticulum, vacuole | 29.63 | 23.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400043110 | EnsemblPlantsGene:PGSC0003DMG400016725 | EntrezGene:102583526 | PANTHER:PTHR35132 | PANTHER:PTHR35132:SF1 | PGSC:PGSC0003DMG400016725 |
| RefSeq:XP_006348166.1 | SEG:seg | UniParc:UPI000296DE50 | UniProt:M1BE39 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016725]
Coordinates
chr2:-:36821268..36822644
Molecular Weight (calculated)
37470.6 Da
IEP (calculated)
10.710
GRAVY (calculated)
-0.805
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPERLTSC NSGTRRISSD SIHSPEFEFW MVRNPSFPQP NQLSADELFS DGILLPLDLL QNDPNAISPE PSGSGRSETD SGGEPSAAIV NSSAGGASFT
101: SSKRWKDIFK KTDKKDSNEE SCREKKKDKK KEKKLVGGSN GVTGAELNIN IWPFSRSRSA GNGGSRPRVT GGSGLATRKV SSAPCSRSNS AGESKSRKWP
201: SSPSRGGVHL GRSSPVWQVR RSSVNSGSGS RSSDNLVRTN EKSIRKEAPQ KESSTKKVVI KKEGVEGRRK WSSAAAGGGP KTRVLNLNVP MCIGYRNQLG
301: CRSDENSAIN IAATANGGVV GDQSGSSTVT GEGVRGSNLF NIKSLFTKKV Y
101: SSKRWKDIFK KTDKKDSNEE SCREKKKDKK KEKKLVGGSN GVTGAELNIN IWPFSRSRSA GNGGSRPRVT GGSGLATRKV SSAPCSRSNS AGESKSRKWP
201: SSPSRGGVHL GRSSPVWQVR RSSVNSGSGS RSSDNLVRTN EKSIRKEAPQ KESSTKKVVI KKEGVEGRRK WSSAAAGGGP KTRVLNLNVP MCIGYRNQLG
301: CRSDENSAIN IAATANGGVV GDQSGSSTVT GEGVRGSNLF NIKSLFTKKV Y
001: MCYVPQTLHI WSHCTCSSSF LSLTNSLIYY LLLLLRPSKT LSLSLSSTMD SPTSIRSKPL PETLSPCGSQ RRRSSCDSNP PEFEFWRLTN SSFPQADSDL
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
101: LSADELFHDG VLLPLDLLSV KSELQSDPNI AECDPDPSPS TGSLITEQKS DLEPGLGSEL TRETTVSKRW RDIFRKSETK PPGKKEKVKE NKKEKKKTGS
201: GPSSGSGSGA ELNINIWPFS RSRSAGNNVT RPRMSFGAPT TRKVSSAPCS RSNSTGESKS RKWPSSPSRN GVHLGRNSPV WQVRRGGGAP VGKTIPEPMG
301: RVVGKREIPE TRKGKTVIES NKAKVLNLNV PMCIGYRSRL SCRTEESSGG GNSNIGSDNN NNNNANANNP NPNGLFGFRN LFIKKVY
Arabidopsis Description
Serine/arginine repetitive matrix-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L4C5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.