Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04795.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT2G04795.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18651 | Soybean | mitochondrion | 56.82 | 46.73 |
| VIT_12s0059g02120.t01 | Wine grape | mitochondrion | 55.68 | 45.79 |
| KRH73490 | Soybean | mitochondrion | 53.41 | 43.93 |
| CDX93064 | Canola | mitochondrion | 38.64 | 37.36 |
| Bra035385.1-P | Field mustard | mitochondrion | 40.91 | 36.36 |
| Bra013194.1-P | Field mustard | mitochondrion | 37.5 | 36.26 |
| AT2G04795.1 | Thale cress | mitochondrion | 38.64 | 35.79 |
| KRH14655 | Soybean | mitochondrion | 40.91 | 34.95 |
| AT5G35732.2 | Thale cress | mitochondrion | 34.09 | 29.7 |
| CDY50046 | Canola | cytosol | 37.5 | 26.19 |
Protein Annotations
| EnsemblPlants:Solyc07g006590.1.1 | EnsemblPlantsGene:Solyc07g006590.1 | UniParc:UPI000276C79D | UniProt:K4CBD0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:+:1425483..1425749
Molecular Weight (calculated)
9808.8 Da
IEP (calculated)
8.523
GRAVY (calculated)
-0.180
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKSPRVADE NMTNICRGGT TSRSTRQHNW NGFSIICGVF RAPLALFSCL NHPRINGTDG VWVSGEFSQI SEMNHLMVSD SMRYAILM
1: MTQMLSVLRR NLQNLRKSPR VADDTELPSS TSGAGPGVVA NGRRDGFNSV IMRFPFSIIS CFAVPRVSGT DGLWVSGDYG SISEVNHLMV SDSMRYAILM
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Euk /.../s - 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT5G35732]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.